RNA id: TU148129


Basic Information

Item Value
RNA id TU148129
length 2500
RNA type TUCP
GC content 0.47
exon number 7
gene id ubl3b
representative False

Chromosome Information

Item Value
chromosome id NC_056712.1
NCBI id CM032081.1
chromosome length 26701998
location 16270565 ~ 16279182 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCATATATGGCCAGCTGACTTCCGGTGTCTTTAAATTCTCAGCCATTAATCTGCCTGAACGCTGCGAGTGAATTTAGCTACATCTGGTCTGATTGAACGATGGATATACCCGTCAGTTAATGTTCGAGGAAAGCCCTAGACCGTCAAACGTCGAACGCTCTGGATCTGCTAGACGCCCGCGACTCGATCAAAACGGTCGTTTTAGTTCCTCTTTATTTTGCCGCAGTCAGAAATTATTCCAGCTCAAGGCCAGCGGTCGCGCGCACTGTCTTTCTGCTCCTACAGCCCGCACATCTTTTGCCTCATAAACTAAACACGTCTCTTGTTTAATGGCAGATTTCGATTTCTAACAGATTCGGTCTGAGGCGGATATATAATGCTGTTCCAGTAATACAAACACTGGTTTGGCTTTAAGTCAAGTAGAGCAAAGGCCGTGCGAGGCAGAGAAAGGCCAGAGGGAGAAGACGTATACTGAGTCTTTGTGCCAGGGGTTGTGCTCCCCTCTTACTGCTGGTCACCCATCGATTCCTGGCTGACTTCCACCTCTGATCACAGCCATGACCTCTCAGAGAGACCCCGACACAGTGAATCTACGACTGATCCTTGTGAGTGGGAAGACACAGGATTTCACTTTCTCTCCAAATGACTCTGCCACAGACATCGCCCGGCATGTTTTTGAGAACTGGCCAGCAGGCTGGGAGGAGGAGAGCGTGAGCAGCCCCAGTATCCTGAGGCTGATCTTTCAGGGCCGCTTCCTGCATGGCAATGTCACACTAGGAGCTCTGAAGTTGCCCCCTGGCCGAACAACTGTCATGCACTTGGTTGCCAGAGAGACACTGCCAGAGCCGAACTCCCATGGCCAGAGGAACAGGGAGAAGACTACAGAGAGCAGCTGCTGTCTACTGCTGTAAAACCCCGACAAACCTTCCCCCGCTTCCTCCTCGTCCTTCTCCTCCCCGCTCCCGTCTCTGCTCACCAACCCGTGGTGCATTCTGGATGATTACAGAAGAGCTCCAAGGGAGAGTGCGACTAGGTTTTTTTCGTTCAGTGTTTTTGCTCTGTATAGTAGCCGGAGACTCTCTTGTGCCAAGTTTATCAACTCTCATATGTTTGCCTTCGTTCGGTTTTCTCGTTTCGTTTGGTTGCCAAATTTACTCGCTTAGTGAAGAGGCCGTTTGTTCACGGGCCTCCTGAACATATTCAACTGTGCAAATACCTGAATCGTTGAAAGGAAATTATGTAAACGGATGCGTGAACAGGTTTTTAGGGGGACGTCCCTTTGCTCGAGAGACCTTCTGCTCTCCCAACACCCAAGTGTCAGAGTTTTCACTTGGATCGCACGTCTGACTCAGACGAAGCTTAACATGCGTCATAATCTCAAGACTTTTGATTGCACTTAACACGGATCCTTATCTGAAGTCActtatgtgtgtgttgtagtcTTAATCCTCCCGCCTGCCTCAAACAGAAGGAGCTTACAGAGAGAGGTGTGATGACACAAGCTCCAGTCTGTTGCTGTGGACCGAGAGAGTCTGCTGTAGCGCTGGTGGATCTGATGTGCCATGGCCGCCTACGTTTCTTGCCTTTGTCCTAGGACCAATCGAGAGTAGACTCCTCTTACTGACCAGTTGCGTCGACATCTGTGCATGACCCTAGTCTAGTGTTTCCTCGCCCTGGGTGTGTACCAGCCGCCTTTAAAAACCATTCACCCCGTGTCTACTTGAatagcgtttttttttgtttgttcgtttgtttgttttctcctcGTCTCCGCTGAAGAAGCATGAGGGAAGGTAGGcggtttttgtgctttttgtgaAATGACACACACTATTCTTCTTGCCCAGTCAGGATATATCATTCGTGTCCTCTCCCTTGCTCGTCTAACGCGCATCCTGAGGGACGAAGCCCAGGTGTGAAGAATAAGGAAATCATCCGAAAGCCTCTGTCTGGAGCGAAGGGCTGGGTTGGTAAAAGCCCCCATTATAAGCGCTATGGATTCATGGACCCCCTGCTGCGCTGCAGCTTTAGAGGTAAAGATGTGCGCCGAGAACGGCCACCACTAATGGCCTCCCACTGGgccagaagaaagaaaaagaaaaaaaacaacgttTTATTTCCTAATGTTTGTATGCCGTCTGTTTTGTTTGCCTTTTGATTGtggaaaattaatattattaataatggagTAATAATGGAGTCCTTTTTATCTTGTCTGAGTATGGTTGAGTTTTTATTAGTACACATCAGATGGCTGACTCGTGTTGATTGTGTGTGCGATGAGTGGAtgaagctgctttttttttgtttgttttgaaagagtGCAGTTGTTGCTGGGAAGAGTGTCCACAAAAACTGTCTCCAATCTTGTTTTGATTGGCCAATTACTGCAAGAGTGTTTATCATCGTCACTGCTATGAAAATTAgctacaaattattaaatgtaaaaaaaaaaaaccctaaatcttgtattataaattaataaaaaccttTCAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148120 lncRNA upstream 47116 16223217 ~ 16223449 (+) False c14hxorf65
TU148078 lncRNA upstream 270050 16000098 ~ 16000515 (+) True G100123
TU147931 lncRNA upstream 295780 15970638 ~ 15974785 (+) True G100015
TU147937 lncRNA upstream 298215 15888307 ~ 15972350 (+) False G100015
TU147960 lncRNA upstream 350123 15919747 ~ 15920442 (+) True G100033
TU148123 lncRNA downstream 1259 16280438 ~ 16339796 (+) True fosl1a
TU148144 lncRNA downstream 34336 16313515 ~ 16315111 (+) True G100157
TU148165 lncRNA downstream 113530 16392709 ~ 16394409 (+) True G100172
TU148179 lncRNA downstream 162552 16441731 ~ 16484341 (+) False zdhhc2
TU148192 lncRNA downstream 203094 16482273 ~ 16482598 (+) True G100185
XM_043257445.1 mRNA upstream 371 16258497 ~ 16270194 (+) True slc7a3b
XM_043257466.1 mRNA upstream 12298 16242388 ~ 16258267 (+) True si:ch211-126c2.4
XM_043257469.1 mRNA upstream 12298 16252585 ~ 16258267 (+) False si:ch211-126c2.4
XM_043257468.1 mRNA upstream 12298 16252603 ~ 16258267 (+) False si:ch211-126c2.4
XM_043257467.1 mRNA upstream 12298 16252603 ~ 16258267 (+) False si:ch211-126c2.4
XM_043257856.1 mRNA downstream 9261 16288440 ~ 16306480 (+) False LOC122358083
XM_043257855.1 mRNA downstream 9264 16288443 ~ 16306480 (+) False LOC122358083
XM_043257857.1 mRNA downstream 21678 16300857 ~ 16306480 (+) False LOC122358083
XM_043257854.1 mRNA downstream 21679 16300858 ~ 16306480 (+) True LOC122358083
XM_043257061.1 mRNA downstream 55976 16335155 ~ 16339801 (+) False fosl1a
XR_006252592.1 other upstream 460498 15810005 ~ 15810067 (+) True LOC122358307
XR_006252591.1 other upstream 460836 15809656 ~ 15809729 (+) True LOC122358306
TU147891 other upstream 531468 15724212 ~ 15739097 (+) False zic3
XR_006252491.1 other upstream 1641353 14581463 ~ 14629212 (+) False macrod1
XR_006252489.1 other upstream 1757375 14510506 ~ 14513190 (+) False setd7
TU148690 other downstream 1782594 18061773 ~ 18063399 (+) True G100560
TU148907 other downstream 2204921 18484100 ~ 18490715 (+) False mtnr1al
TU149047 other downstream 2643236 18922415 ~ 18924261 (+) True G100796
TU149048 other downstream 2643319 18922498 ~ 18924261 (+) False G100796
TU149239 other downstream 3011191 19290370 ~ 19295178 (+) False cxcl14

Expression Profile