RNA id: XM_043257855.1


Basic Information

Item Value
RNA id XM_043257855.1
length 2623
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC122358083
representative False

Chromosome Information

Item Value
chromosome id NC_056712.1
NCBI id CM032081.1
chromosome length 26701998
location 16288440 ~ 16306480 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGTtgataaaaagCAGCGGAGGGAGTTGAGTTTGACAGCTTTCAGCGTCCTCTTCACTCAACAGCCTGGAAAACTATGCACAAAAATCTGCGACACCTTCACCACAGATTGGCTTAGGAAGTCTTAAGATGGGATTGTACCTGTAAGgtTGCATACGCCATGGTGCCTAACCGGAGATTGGGTCTGGCCCATCCTTGCTGTATCGGCCTGCTGTTTCTGCTCCTCCTGCCCAGCTCGGTTTCAGTGAGAGAACCTCGTCATCAGTCCCAGCTCCCCTCGCTGATACCTCACGCCACCCTGCCCCTGTCCCGCTCCCGCTTCAGCGCCAAAGCGCAGTTGGACCTCACCACCCACTGCAACGAGAGCTGCTTCCACAAAGCAGAAGACAACGATAAAGAGCACCTAGCGTTCGAAACTCTTTACTCAGACGGCTCGCGAACTTTAACCACCGTCGACCTGGAAGAAAGCGACACTGAACTCAATGCCAAAGCAACCGCTCCCAGGCGCAAGCGGCTAAAGCGCCAGATCTACGGTTCGGACGGGCGCTTTAACATCCGCGGTGACCACTTCCTTCTGGACTACCCCTTCTCCACAGCCGTCCGCATCTCCACCGGCTGCACTGGAGTTCTGGTGTCCCAGCAGCACGTCCTGACCGCGGCCCACTGCGTCCATGATGGGAAGGATTACGTCAAGGGAGCGAGGAAACTCAGGGTGGGCTTTCTGATCCCTCCGTCTGTTAACGGTACAAAGCCGGGTCAGGCTCCTGTGAAGAAACCCTTGGTGCGCTGGGTGAGGGTTAAGCGCACGCGGGTTCCTAAAGGCTGGATTCAAGGCCCTCAAGACGTCAGCATGGATTTTGACTACGCACTTTTAGAGTTGCGCTGGCCTCACCGGCGTCCCTTCATGCGGCTGGCTGTGGCACCCTCCTCAGACAGTTTGGCTGGTAAACGCATACACTTCTCTGGTTTTGACAGCGACCGGCCTGGAGAGCTGGTGTACCGCTTTTGTCCAGTGGAGGACGAGTCCAACGACTTGATCTACCAGCACTGTGACGCGCGGCCTGGAGCGAGCGGCTCTGGTGTCTACGGACGCGTCTGGGACGAAACATTAGAGCGCTGGGAGCGCAAGGTGATTGGGATCTTCTCGGGCCACCAGTGGCTGGAAATCAACGGCGAGAATCGCGACTACAACGTGGCTGTTCGATTCACTCCACTGAAGTTCGCGCAGATCTGTTACTGGGTTCATGGAAATAAGGTGGACTGCAGTCAGGACTGAAATGATGTGACACAGAGGAATGGGATGATATTAAATCAGAGGATGTTGGACACTGCACTTTACAGTCCTTTTACAGGTGTGGCTACTGAAGAAAGAAGGTCCATGTCTGGTAGATCATTACTCACAGGCTTTGATCACTCGAATGGGCTGAGCTGGAACTTTGTTTAACCACTACCTTTAGCTTTTGCTCACTATACTGACAATGTTACACATAGATTTAGACCCAGAGTCCTGCAACCTAGTAGATTTATCTTGTCAAGTCTTTGCCAATGTTAAGTAGACATCTGATCTCAGTTATATGATTCTTTCCACAGCCTTGCTTTGGTCAGATTACACATTATAGATGCTTCGGTCTGTTCTTTGCACTTTTAGATTTGGTATggagagagtttttttttcttgatataTCATGACTTGGGTGTTGGTTAACAGTAGATTAACATACAGGTCTTTTCATAGACAGGTCTTGGCCCAATCCAGGATTAAGCCATAGTTCAAGTATggcatttaagtaatttttttaaacttgcctTTGAAAGAGCATTACtggcactgacatgttttaagatcagtcggtgcaagtttttgtttttttcagtccaAGACTAAGTTTTGCCTGTGAAACCGGGGGACAGAGTTTCTTTGGTGACTTAAAGTAGCTGCAAAATGGCTTTTGATTTTTTCCTTTCCATCCCTGCATATTTGTTTGGTCTGCTAAGCATAAAGTTTCTATGCCTTCTGATTTATGATTAccacaataacataaaaaaatcaatgactGTGAGATGTAGAATGGGTGTTAAATTGAGAGTTTGTAGACagagttttaaaatatgtatatttaaagcaTGGATTCAAACTATCAAAAAGTTGgtttattaatgcattcatcTGACTGTATGAATATCGTTCAGTTCTGCAGTTACACATTTCTAAGACAGATAAAGACCTCATATTGGTAAAATGGCGTTGAGATATAATTTTCCCTATTATTATATGTCggattaatataaaaactggaCACAGACTAAGAGAAAAAGGTTGTGGGGTAAATGTTGAttataattctattttttaaaagcttttattttaataaacaaatatgtctgtcgtttttcctgtctttttcaTTACAATGTGATATGTACTTTCTTAATGAGGACTTTATGAAGTTAGTGGTAACATTAGATATGATTCCGTGTTGTATGTTTCctgtattatttagaaaaaaaaaggataaaaagaaaaggagaacTACAATTTTGGTGTCTGTACGTAAAATGCGACACTGGTACCCTCTGGTGGTaaacgcattaaaaaaaaaagtttcctcaCGGTGCACTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148120 lncRNA upstream 64994 16223217 ~ 16223449 (+) False c14hxorf65
TU148078 lncRNA upstream 287928 16000098 ~ 16000515 (+) True G100123
TU147931 lncRNA upstream 313658 15970638 ~ 15974785 (+) True G100015
TU147960 lncRNA upstream 368001 15919747 ~ 15920442 (+) True G100033
TU147940 lncRNA upstream 372429 15888307 ~ 15916014 (+) False G100015
TU148144 lncRNA downstream 7035 16313515 ~ 16315111 (+) True G100157
TU148165 lncRNA downstream 86229 16392709 ~ 16394409 (+) True G100172
TU148179 lncRNA downstream 135251 16441731 ~ 16484341 (+) False zdhhc2
TU148192 lncRNA downstream 175793 16482273 ~ 16482598 (+) True G100185
TU148333 lncRNA downstream 213460 16519940 ~ 16520174 (+) True G100298
XM_043257323.1 mRNA upstream 9261 16270593 ~ 16279182 (+) True ubl3b
XM_043257322.1 mRNA upstream 9261 16270593 ~ 16279182 (+) False ubl3b
XM_043257445.1 mRNA upstream 18249 16258497 ~ 16270194 (+) True slc7a3b
XM_043257468.1 mRNA upstream 30176 16252603 ~ 16258267 (+) False si:ch211-126c2.4
XM_043257061.1 mRNA downstream 28675 16335155 ~ 16339801 (+) False fosl1a
XM_043257060.1 mRNA downstream 28676 16335156 ~ 16339801 (+) False fosl1a
XM_043256570.1 mRNA downstream 40085 16346565 ~ 16351052 (+) False fibpa
XM_043256571.1 mRNA downstream 40115 16346595 ~ 16351052 (+) True fibpa
XM_043257975.1 mRNA downstream 47302 16353782 ~ 16366097 (+) True efemp2a
TU148129 other upstream 9264 16270565 ~ 16279179 (+) False ubl3b
XR_006252592.1 other upstream 478376 15810005 ~ 15810067 (+) True LOC122358307
XR_006252591.1 other upstream 478714 15809656 ~ 15809729 (+) True LOC122358306
TU147891 other upstream 549346 15724212 ~ 15739097 (+) False zic3
XR_006252491.1 other upstream 1659231 14581463 ~ 14629212 (+) False macrod1
TU148690 other downstream 1755293 18061773 ~ 18063399 (+) True G100560
TU148907 other downstream 2177620 18484100 ~ 18490715 (+) False mtnr1al
TU149047 other downstream 2615935 18922415 ~ 18924261 (+) True G100796
TU149048 other downstream 2616018 18922498 ~ 18924261 (+) False G100796
TU149239 other downstream 2983890 19290370 ~ 19295178 (+) False cxcl14

Expression Profile