RNA id: TU149047


Basic Information

Item Value
RNA id TU149047
length 1847
RNA type TUCP
GC content 0.42
exon number 1
gene id G100796
representative True

Chromosome Information

Item Value
chromosome id NC_056712.1
NCBI id CM032081.1
chromosome length 26701998
location 18922415 ~ 18924261 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tatcACAGCACCACAGAATGATAGAAGACCCAtctaaaatctaatattttccACCAAAAAAAGAGCATACAGGTCTCGGAACAAcgcgagggtgagtaaataatgaccgaattttcatttctgggtgaactatacctttaagaatATGTCACGTGCATGACTCCTGGTTATGAGGAGAGGAAATACAGCTGCTTGATCAAACaaattgaatggaaaaaaaccaTGCAGATGAATTTTCGTTCCTTGACATTTCTAACTAAAACCTCTCAAAGCAATGACGTGCCACGATGAAGCTCGCTTCCAGAGCCGAAGAACCCAATAAACGCGCTCCTCCGAGAGCCTGGATATAGCAGAACTGACCCAGAACAATCCTCATCCCTCATTCCAGCACTCGCCCGTCTGCTGAAGCGTGCCTCTGCCTCGAATCGGTTACCTTCGGGATTGTCTGAATTGATCTAagagatgtaaatatttttaaataaccgCGTTTTCTGTGTCAGCCATCAGAAAGATTCTTCTTTGCTATTTTGAAGGGATGCGCCGACGGCGCCATACTACAAATGTGTACAGCTCAGCACTGTCCTCGTGCGTCGGTTTCCCGAAAACGAAAACCTCTCCTGCAAATAAAGCACTTGTAGCACTTTTATAACATGAAGACCATTGCATCCACCAGTCGTTCAGTATTCTGGTCACGAATATGTTATAGCAGACCAAACTAATATGGAGTATGAAAGCTGATTTTCATGATCAGCTTCGATAAACATAATTTGCCGAAGAGACAAATAAGATTTGACCCACCAACGGAAGTCTATTACGGCTTTATTTGTTCCGATACAGAGCTAGCTCCAGGGAATGCCCACTTTAGCTTTCTTTTCTCGTCTTCTCATGTTTTTATCAACCgatatttaatttctaaaggTAGAGCttagtttgattttattgtacataggaatatatttttatgcaaacgTTTTGATAGTGGTCCGTGTGTTCTTTTAAAGGCTTTCTTCTTCCAGTCCGGTGTATCTGACCATGAATCTAGCGTGTCATTGGAATAAGCTGTATGCCAGGCTActtgtttttttgggtttttttacaaatcaatcATGTACATGGTCGTGCCTTCACAGCCATCTTATTACGGATGTACAGAGCATTGTGAAACTGTGCAAGTTCGTGCTGGCAGTGGTCGAAAAAAGTCGAACAATCAAAGACAAACCCGCCGCCCGCGGAGCTCCGGCGAGTCAAAACGTCCAAATTATCGATCTCCGCTTTTCATTTGTACGACTCAAATTATGCAGCACCTTCGAATTCCGAGGTACTTCGCCGTCGTTTAACGGTAAGCCGTTTTTTTTTGCGGGCCGACACAACTTGCACAATTTCCTATCTGCGTTCTTTGGATGTCGCTACGTTGTTTAAagatggagatttttttttaaaaaaaggatgacGTTTAGGAAACAAGAAACCGATGGTAATGATGGAATGATGGTAACTCCACAGTCACGACAGAACCAAAAACACTCCTACATGAGCCCAGAGTTATTGCTCGGAAGAGATCTGCGTCAGAAATAACTCTCCAGCGAACCTTCATGGACCTTCAGGGTAGTCACTGCCGTCAGGAAGCGTCGCATGTGAAGGCCCTGAAGGCAGAAGTTCTAAGCATGAATGTGTTGTAAATCTCCCAACGAGTTGTAGAACTTTTGTAAACTCAGTATTTATTTTGGTGGATTAAGATTGATATTTTCATGTAAGGCTTCTCTTTCAGGGAGCTGTGTGTATTACTTTTTCTGTTGCTATGTGACagctctaaaaaaataataattaaagactACGAGATGTTATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148959 lncRNA upstream 311278 18561034 ~ 18611137 (+) True G100743
TU148953 lncRNA upstream 392382 18528637 ~ 18530033 (+) True atox1
TU148940 lncRNA upstream 427050 18494941 ~ 18495365 (+) True G100724
XR_006252573.1 lncRNA upstream 540759 18354647 ~ 18381656 (+) True LOC122358095
XR_006252571.1 lncRNA upstream 551152 18354647 ~ 18371263 (+) False LOC122358095
TU149073 lncRNA downstream 60562 18984823 ~ 19018516 (+) True G100804
XR_006252550.1 lncRNA downstream 98625 19022886 ~ 19030974 (+) True LOC122357915
TU149093 lncRNA downstream 106688 19030949 ~ 19031255 (+) False LOC122357915
TU149095 lncRNA downstream 109113 19033374 ~ 19033711 (+) True G100823
TU149096 lncRNA downstream 111591 19035852 ~ 19036330 (+) True G100824
XM_043257662.1 mRNA upstream 92 18837105 ~ 18922323 (+) True htr4
XM_043257665.1 mRNA upstream 95 18836814 ~ 18922320 (+) False htr4
XM_043257660.1 mRNA upstream 95 18837105 ~ 18922320 (+) False htr4
XM_043257664.1 mRNA upstream 95 18837105 ~ 18922320 (+) False htr4
XM_043257661.1 mRNA upstream 96 18836816 ~ 18922319 (+) False htr4
XM_043256774.1 mRNA downstream 6780 18931041 ~ 18933605 (+) True si:rp71-1d10.8
XM_043257504.1 mRNA downstream 10235 18934496 ~ 18947336 (+) True matr3l1.2
XM_043257344.1 mRNA downstream 24972 18949233 ~ 18958172 (+) False matr3l1.1
XM_043257345.1 mRNA downstream 25076 18949337 ~ 18958172 (+) True matr3l1.1
XM_043257581.1 mRNA downstream 33958 18958219 ~ 18965141 (+) False tmem216
TU148907 other upstream 431700 18484100 ~ 18490715 (+) False mtnr1al
TU148690 other upstream 859016 18061773 ~ 18063399 (+) True G100560
TU148129 other upstream 2643236 16270565 ~ 16279179 (+) False ubl3b
XR_006252592.1 other upstream 3112348 15810005 ~ 15810067 (+) True LOC122358307
XR_006252591.1 other upstream 3112686 15809656 ~ 15809729 (+) True LOC122358306
TU149239 other downstream 366109 19290370 ~ 19295178 (+) False cxcl14
TU149269 other downstream 424998 19349259 ~ 19350550 (+) True G100926
TU149644 other downstream 1676412 20600673 ~ 20602135 (+) False LOC122358150
TU149758 other downstream 2006222 20930483 ~ 20979399 (+) True G101246
TU149764 other downstream 2032533 20956794 ~ 21052432 (+) False G101250

Expression Profile