RNA id: TU149758


Basic Information

Item Value
RNA id TU149758
length 1630
RNA type TUCP
GC content 0.48
exon number 2
gene id G101246
representative True

Chromosome Information

Item Value
chromosome id NC_056712.1
NCBI id CM032081.1
chromosome length 26701998
location 20930483 ~ 20979399 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaaaaaaaaaaaaaaaaaataaaaaaaaaaacaactcactataaataaaacaaactttgcGCTTGCGACCAGCACAGtctttcatttcaataaaaccTAGTTCATAAATGaacgacaaaaaaaagactacacGGATTTGGACAAAACCGACATTctaaaaaataagtgtaaacATTTATGAGTGAACATACTCTCCCTccgtttctctttctttttagttttttgaaatACAGCCTCTTCACGAAGCCACGTGCCTTTTTCATAGAGACAAACTCTGACGGCAAATAAGTCAGAAGTCCAATATTCTTCTACAGACGTTGATTGCTTTACAGCTTGTGATAAAAAGCTCCTCTGCAATACAATTAATTCTGAAGTCCCCGATATGTCGtcataaaatgctttaaaacggACAACTCATTGAgattaaaaatagtttctttttttaaaaacgaaaTTGAACTTcgattcttttcttttttttttgcaaatcaaaaCGTTCAAGTATCCGAAGTACttagtcttttttgttttttaaggaGTCTTTCAAATGTGGGTTAGGGGTAGCGTTCCGTTCACGCCAGTCCCTGCGCTTTGATAGTGCGGGTGAACGCTGTGTAACCGACTGCTCTGTAGGCTGGAGTGGTCGGCGCTGTCTCCTCCGGGGGGCAGGTACATGCTTATCATATCCCTCAGGTCTCCCAAACAAGCACGCTGGGAATGAGAGGTTATGGCCGGAGGAGGAGAGCTGGGTTCCGTCTTGCACACCGAAGCCATGGAGCCCAAGCCCATTGCACTGGAAGTTTGCTGCGTGTATGCTGGTGACATGCTGCTGTACGTGGACGCGGCGTTCATGTAGGTCTGGGCCGTGGACATCATGGGGTACTGAAGCCCGGCCATGTCGTACCGGTGCATCTGCTGGATCTGGGGGCTGTTCATGCTGGGATGCTGAGGGTAGGCCAGCTGGTCCTGCATGAGGGAATAGGCGCTGTTCGTCCAGCCGTTCATGTGCGTGTAGTCCATCCGCTGGCCCACTGACACGGCGTTGTTGACAGCGTTGGCACCGGGTGCCAAGAGTCCTCCGGGCAAGGAGTACTTGTCTTTCTTCAGCAGGGTCTTGGTCTTCCTGCGGGGACGGTATTTGTAATCCGGATGCTCCTTCATGTGCATGGCTCGCAAGCGCTTGGCCTCGTCGATGAAGGGTCTCTTCTCGGCGTCAGTCAAAAGTTTCCAGTCAGCACCGAGGCGCTTGCTGATCTCGGAGTTGTGCATTTTGGGATTCTCTTGTGCCATCTTCCTCCTCTGGCCGCGGGACCACACCATGAAAGCGTTCATAGGCCGCTTGACCCGGTCCTGGTCGCTGGAGCTGTTGTTTTTGCCGCCCGCCGCCGAGCCCGTGTTGGACTGCGGAAGGGGGCTTTTAATCTCGGTTTCCATCATGTTATACATTCAAACGACTTGGAAGCGGTGCCGCGCACTCGAACGAAAAACGCTGAAGTTTAAAGAGCCTCACCAAATAGAGCGGCCGGTAGTCAGTCAAAAGTTCACAGAGATAATACTCTGGTCAGCTGAGAAGCACCGAACTCTTTTAAAAGTCTCCACACCGGTCCCGCGTGTCTTGCTCTGCTCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149727 lncRNA upstream 93825 20825405 ~ 20836658 (+) False G101229
TU149728 lncRNA upstream 97061 20825405 ~ 20833422 (+) True G101229
TU149699 lncRNA upstream 141029 20789160 ~ 20789454 (+) True G101210
TU149689 lncRNA upstream 148407 20734733 ~ 20782076 (+) True G101200
TU149654 lncRNA upstream 307483 20622623 ~ 20623000 (+) True G101180
TU149768 lncRNA downstream 68949 21048348 ~ 21052432 (+) False G101250
TU149766 lncRNA downstream 69486 21048885 ~ 21052432 (+) True G101250
TU149846 lncRNA downstream 180174 21159573 ~ 21228265 (+) True G101316
TU149852 lncRNA downstream 197647 21177046 ~ 21178830 (+) True G101320
TU149847 lncRNA downstream 247696 21227095 ~ 21239009 (+) False G101316
XM_043257610.1 mRNA upstream 131507 20795226 ~ 20798976 (+) True f9a
XM_043256934.1 mRNA upstream 308098 20618742 ~ 20622385 (+) True LOC122357533
XM_043257932.1 mRNA upstream 316949 20600810 ~ 20613534 (+) True LOC122358150
XM_043256933.1 mRNA upstream 338017 20591158 ~ 20592466 (+) True LOC122357532
XM_043257853.1 mRNA upstream 1271339 19655587 ~ 19659144 (+) True mars2
XM_043257781.1 mRNA downstream 45153 21024552 ~ 21030351 (+) True arr3b
XM_043257780.1 mRNA downstream 45153 21024552 ~ 21030351 (+) False arr3b
XM_043257777.1 mRNA downstream 51134 21030533 ~ 21035258 (+) False nkrf
XM_043257776.1 mRNA downstream 51721 21031120 ~ 21035258 (+) True nkrf
XM_043257778.1 mRNA downstream 52687 21032086 ~ 21035258 (+) False nkrf
TU149644 other upstream 328348 20600673 ~ 20602135 (+) False LOC122358150
TU149269 other upstream 1579933 19349259 ~ 19350550 (+) True G100926
TU149239 other upstream 1635305 19290370 ~ 19295178 (+) False cxcl14
TU149047 other upstream 2006222 18922415 ~ 18924261 (+) True G100796
TU149048 other upstream 2006222 18922498 ~ 18924261 (+) False G100796
TU150017 other downstream 420928 21400327 ~ 21400753 (+) True G101440
XR_006252531.1 other downstream 1302893 22282292 ~ 22309112 (+) False gria2b
XR_006252530.1 other downstream 1302893 22282292 ~ 22307451 (+) False gria2b
unassigned_transcript_1960 other downstream 3072304 24051703 ~ 24051775 (+) True trnav-uac_6
TU150815 other downstream 3107325 24086724 ~ 24089522 (+) True tmem35

Expression Profile