RNA id: unassigned_transcript_1960


Basic Information

Item Value
RNA id unassigned_transcript_1960
length 73
RNA type tRNA
GC content 0.53
exon number 1
gene id trnav-uac_6
representative True

Chromosome Information

Item Value
chromosome id NC_056712.1
NCBI id CM032081.1
chromosome length 26701998
location 24051703 ~ 24051775 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTTCcatagtgtagtggttatcacgtcTGCTTTACACGCAGAAGGTCCTGGGTTCGAGCCCCAGTGGAACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150701 lncRNA upstream 79968 23970291 ~ 23971735 (+) False nitr14b
XR_006252587.1 lncRNA upstream 101138 23949157 ~ 23950565 (+) True LOC122358238
XR_006252498.1 lncRNA upstream 693011 23267299 ~ 23358692 (+) True LOC122357577
XR_006252497.1 lncRNA upstream 693011 23267299 ~ 23358692 (+) False LOC122357577
TU150641 lncRNA upstream 694165 23357074 ~ 23357538 (+) False LOC122357577
TU150837 lncRNA downstream 218276 24270051 ~ 24270368 (+) True G102019
TU150900 lncRNA downstream 525413 24577188 ~ 24577506 (+) True G102068
TU150901 lncRNA downstream 526428 24578203 ~ 24578529 (+) True G102069
TU150994 lncRNA downstream 1006056 25057831 ~ 25059187 (+) False LOC122358267
TU151009 lncRNA downstream 1038737 25090512 ~ 25145183 (+) False G102143
XM_043257294.1 mRNA upstream 28085 24021659 ~ 24023618 (+) True mid1ip1l
XM_043257293.1 mRNA upstream 30533 24016922 ~ 24021170 (+) True tspan7
XM_043258083.1 mRNA upstream 61605 23979011 ~ 23990098 (+) False itga6l
XM_043258082.1 mRNA upstream 61605 23979012 ~ 23990098 (+) True itga6l
XM_043257904.1 mRNA upstream 79454 23970152 ~ 23972249 (+) True nitr14b
XM_043257562.1 mRNA downstream 2931 24054706 ~ 24063276 (+) True cstf2
XM_043257563.1 mRNA downstream 2931 24054706 ~ 24063276 (+) False cstf2
XM_043257604.1 mRNA downstream 23700 24075475 ~ 24086406 (+) False arl13a
XM_043257602.1 mRNA downstream 29415 24081190 ~ 24086406 (+) True arl13a
XM_043257603.1 mRNA downstream 29416 24081191 ~ 24086406 (+) False arl13a
XR_006252531.1 other upstream 1742591 22282292 ~ 22309112 (+) False gria2b
XR_006252530.1 other upstream 1744252 22282292 ~ 22307451 (+) False gria2b
TU150017 other upstream 2650950 21400327 ~ 21400753 (+) True G101440
TU149764 other upstream 2999271 20956794 ~ 21052432 (+) False G101250
TU149758 other upstream 3072304 20930483 ~ 20979399 (+) True G101246
TU150815 other downstream 34949 24086724 ~ 24089522 (+) True tmem35
TU150835 other downstream 164468 24216243 ~ 24216763 (+) True G102017
unassigned_transcript_1961 other downstream 176402 24228177 ~ 24228248 (+) True trnae-uuc_32
TU151254 other downstream 1981204 26032979 ~ 26035638 (+) True G102332
TU151318 other downstream 2116783 26168558 ~ 26171402 (+) False gnrhr3

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU5448 False 311 lncRNA 0.56 1 CI01000000 7657994 ~ 7658304 (+)
rainbow trout (Oncorhynchus mykiss) TU5448 False 381 lncRNA 0.45 3 NC_048565.1 5431338 ~ 5433302 (+)
rainbow trout (Oncorhynchus mykiss) trnav-uac-98 True 73 mRNA 0.53 1 NC_050571.1 28353617 ~ 28353689 (+)
striped catfish (Pangasianodon hypophthalmus) trnav-uac_4 True 73 tRNA 0.53 1 NC_047605.1 19313496 ~ 19313568 (-)
striped catfish (Pangasianodon hypophthalmus) trnav-uac_7 True 73 tRNA 0.53 1 NC_047606.1 5473398 ~ 5473470 (-)
mexican tetra (Astyanax mexicanus) trnav-uac_4 True 73 tRNA 0.53 1 NC_035920.1 16630979 ~ 16631051 (-)
mexican tetra (Astyanax mexicanus) trnav-uac_7 True 73 tRNA 0.51 1 NW_019171985.1 100300 ~ 100372 (+)