RNA id: TU150901


Basic Information

Item Value
RNA id TU150901
length 327
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G102069
representative True

Chromosome Information

Item Value
chromosome id NC_056712.1
NCBI id CM032081.1
chromosome length 26701998
location 24578203 ~ 24578529 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAACAATACAAAAGAGCACTTCAAACAAACGACAGAGTGCTGTTATCTCCTTCTGACAGTAGTTTTACTTCGCAAACCCATCAATTCAGTAActgaataaatgctattcttatgacaaaaagcaaataaaaccagTTCCTGTCTGTTTATTGAGTGCAAGTTACATCGAAGCAACGCTGAATTATAATAGCGATAAAACAGAGCTGGTGGTTTTTATTTCTAATGATATTTGCTAGCAATCCCACTAGAGATCAATCTCAATAGCATCAAGATAGTTAAAGTGATGCAAcatttccagcatctgtaattCATCTGATCTTAAGGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150900 lncRNA upstream 697 24577188 ~ 24577506 (+) True G102068
TU150837 lncRNA upstream 307835 24270051 ~ 24270368 (+) True G102019
TU150701 lncRNA upstream 606468 23970291 ~ 23971735 (+) False nitr14b
XR_006252587.1 lncRNA upstream 627638 23949157 ~ 23950565 (+) True LOC122358238
TU150641 lncRNA upstream 1220665 23357074 ~ 23357538 (+) False LOC122357577
TU150994 lncRNA downstream 479302 25057831 ~ 25059187 (+) False LOC122358267
TU151009 lncRNA downstream 511983 25090512 ~ 25145183 (+) False G102143
TU151022 lncRNA downstream 537341 25115870 ~ 25116759 (+) True G102148
TU151013 lncRNA downstream 566009 25144538 ~ 25693470 (+) True G102143
TU151043 lncRNA downstream 864445 25442974 ~ 25465122 (+) True G102164
XM_043257433.1 mRNA upstream 133679 24392320 ~ 24444524 (+) False pcdh19
XM_043257434.1 mRNA upstream 133679 24392320 ~ 24444524 (+) False pcdh19
XM_043257431.1 mRNA upstream 133679 24392321 ~ 24444524 (+) True pcdh19
XM_043257432.1 mRNA upstream 133679 24392321 ~ 24444524 (+) False pcdh19
XM_043256883.1 mRNA upstream 311594 24247418 ~ 24266609 (+) False elf1
XM_043256842.1 mRNA downstream 411356 24989885 ~ 25023912 (+) True glra4a
XM_043256841.1 mRNA downstream 411366 24989895 ~ 25023912 (+) False glra4a
XM_043256843.1 mRNA downstream 458115 25036644 ~ 25040781 (+) True gla
XM_043256839.1 mRNA downstream 462895 25041424 ~ 25051414 (+) False btk
XM_043256840.1 mRNA downstream 462918 25041447 ~ 25051414 (+) True btk
unassigned_transcript_1961 other upstream 349955 24228177 ~ 24228248 (+) True trnae-uuc_32
TU150835 other upstream 361440 24216243 ~ 24216763 (+) True G102017
TU150815 other upstream 488681 24086724 ~ 24089522 (+) True tmem35
unassigned_transcript_1960 other upstream 526428 24051703 ~ 24051775 (+) True trnav-uac_6
XR_006252530.1 other upstream 2270752 22282292 ~ 22307451 (+) False gria2b
TU151254 other downstream 1454450 26032979 ~ 26035638 (+) True G102332
TU151318 other downstream 1590029 26168558 ~ 26171402 (+) False gnrhr3
XR_006252567.1 other downstream 1795804 26374333 ~ 26383634 (+) False khdc4

Expression Profile