RNA id: XR_006252567.1


Basic Information

Item Value
RNA id XR_006252567.1
length 2336
RNA type transcript
GC content 0.61
exon number 14
gene id khdc4
representative False

Chromosome Information

Item Value
chromosome id NC_056712.1
NCBI id CM032081.1
chromosome length 26701998
location 26374333 ~ 26383784 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACACTTTTTAGAAAGATGATCACATTTGTGACGGGTTTTGTCACGAGATCCTGCGCGTGCGCGGCGGCGGCGGAAGTGACGCAGCGCGCTGCGTTTCCGTTGGCTGGTCTGTCCGCTGGAGCGTCAGAAACGGATCGGTTCGGTTCGGTTCATCGCAATCAGAAGCATAAACGCATCTCTCGTCAGATGTCGTTCGGTGTCCCGCACGGCGGCGGccgGCGCAGTAAGTGGGACCAGGCGGGTCCGGGGTCTTCTGGCGAGGCTGATGGAGGCTCTGCTCCGAGTGGAGCTCTGGACGCCGCTGCAGCCGTCGCTGCCAAGATCAACGCCATGCTCGTGGCCAAAGGAAAACTCAAGCCGTCTCAGATCAGCAGCGCTGCTTCCACTGATAAAgtggcaggtgTCGGTGGTAATAAGGTGAAAGATGATCTGGTGGTGGCGGAGGTGGAGATTAACGATGTCCCGCTCACCTGTCGGAATCTGCTGACCCGCGGACAGACTCAAGACGAGATCAGCCGAGTGAGCGGCGCTGCTGTGTCCACCAGAGGACGCTTCATGACCGCTGAGGAGAAGAGCAAAGCACTGCCCAGTGACCGTCCACTCTATCTGCACGTCCAGGGACAAACCAGAGACCTAGTGGACAaggcTGTTAACCGGATCAAGGAGATCATTACTAACGGTGTAGTGAAGGCTGCCACTAACTCGAGCTACAGCGGAGCGACGGTCACCGTTTACCAGCAGCCCGGCCCCGCTCCTCCACCCACAATCCCCCCTGCTGCTCACAAACCACACTACCCCGGAGgaatgcACTATGTGCAGGACAAGCTGTTTGTGGGTCTGGATCAGGCCGTGCAGGGCTTCTGTGTGAAGGAGCGTGTGGAGGGGCCCGGATGCTCATATCTGCAGCACATTCAGGCTGAAACTGGGGCCAAAGTCTTCCTTCGGGGCCGGGGGTCCGGCTGCCTGGAGCCCGCGTCTGGACGAGAGGCCTTCGAGCCCATGTACATCTacatcagTCACCCTAAACCAGAAGGACTTGCTGCAGCTAAAACACTGTGTGAAAACCTCCTGCAGACCGTTCATGCTGAGTATTCTCGATTCCTGAATCAGATGAGCAGTGTGATGCCCACACAGGcaggGTTCATTCAGCCTCCTTCCATTAACGGGATCCCGCCGCAGGCTCCGTATTATTCTCCCGCGGGCTTCCAGCCGTCCTACCCCGGCCCGACCCCGCCGCCGCAGCCCGTCGCTCCTCAGTATCCAGCGGCTCCTTCGGCCCCGGCCCCGGGCCCTCTCCCCACCGCACAGTATCCCATCACCCCCACGCCCCCGAGCGCCCCGGCTCAGACGCTTCCTCCGGCTCCGTTCCCCCCCGCCGCTCCGGCTCCGCCCAAAGCCGTGGCTCCGCCCAATCCGCCACAGAAGCGCCGCTTCACGGAGGAGGTGCCGGACGAGACGGACAGCGGCCTGCTGGGATACCAGCATGGACCCATTCATATGACTAATTTAGGTGCAGGCATGTCTGTGGGCAGCTCTGAGGCATCAGGACCCCCGTCTGCTGCTTCCTCAGGgcctgtgagagagagagacagcagcagcagcaggctCATGCCGCCTCCGTGTGCTCCGGCTCCAGTCGACGGTCTGAGGGTGCAGAAAGCAGAAGAGAAGACGCCGGCGCCGCCGAGCCTTCTGGGTAAGACAGCCGCTTCCGCAGCTCGCTCATAATCTCCCGATGCTCTCTGCATGCAGAAGTGAGGCTCTGCAGCGGCGGAGGACTGTACGCTAGCTACAGCTTCTCCGCCCCTCATTGGTCAGATGTAATGAGTGAAGCTCCTCCCCCGAGCGGTGATGTCATCAGCCGTGTGGTTGCCGCACTAACGGCCGTCtctcttgtgttttgtgttctctctctttctctgtgttttttccctctctttcatGTGTCCGGACGCTGCGGGGGTGGGGCCTCCTTCCTGAACACCGCCTCCTGATTGGACGCCCCTCGGTGACGCGCGCGGCCGTCGTCCAATCCGGCGTTTGATTAACTGTGCTGCTGTGGCgtgttgtttgtctgtgtgtttctggtCTCTCTCATCAGAGCCGCAGGTGAAGCGCGTCAGGATGGGGCTGGTGGCGTACGCCGGGGACTCCTCCGATGAAGAAGAGGATCATGGGGCCTCCAGAGCGTCCGGGGCCACAGGATGGACGTATCGTTGCCCGTCATCACCGCCGCCACGGCCCAAAACACAGGCGCAGACGCAGCCCATGCCCTTCTGGATGGCaccgtaaacacacacacacacacgcacacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151335 lncRNA upstream 96783 26220234 ~ 26277550 (+) True G102385
TU151384 lncRNA upstream 104673 26266474 ~ 26269660 (+) True G102403
TU151381 lncRNA upstream 104755 26266474 ~ 26269578 (+) False G102403
TU151351 lncRNA upstream 137614 26234882 ~ 26236719 (+) True G102393
TU151282 lncRNA upstream 248273 26093845 ~ 26126060 (+) True G102348
TU151415 lncRNA downstream 4312 26387946 ~ 26388699 (+) True G102423
TU151423 lncRNA downstream 22310 26405944 ~ 26407182 (+) False LOC122357543
TU151421 lncRNA downstream 40337 26423971 ~ 26429629 (+) False LOC122357543
TU151388 lncRNA downstream 53775 26437409 ~ 26441594 (+) True G102405
TU151434 lncRNA downstream 61683 26445317 ~ 26446288 (+) True G102439
XM_043257819.1 mRNA upstream 755 26349459 ~ 26373578 (+) True zbtb7b
XM_043257821.1 mRNA upstream 755 26349480 ~ 26373578 (+) False zbtb7b
XM_043257820.1 mRNA upstream 755 26363923 ~ 26373578 (+) False zbtb7b
XM_043257818.1 mRNA upstream 755 26364208 ~ 26373578 (+) False zbtb7b
XM_043257823.1 mRNA upstream 755 26364337 ~ 26373578 (+) False zbtb7b
XM_043257891.1 mRNA downstream 11990 26395624 ~ 26400583 (+) False fbxo43
XM_043257889.1 mRNA downstream 12533 26396167 ~ 26400583 (+) True fbxo43
XM_043256943.1 mRNA downstream 17893 26401527 ~ 26424068 (+) True LOC122357543
XM_043257638.1 mRNA downstream 160283 26543917 ~ 26548675 (+) True LOC122357952
XM_043257564.1 mRNA downstream 189002 26572636 ~ 26579615 (+) True fzd6
TU151318 other upstream 202931 26168558 ~ 26171402 (+) False gnrhr3
TU151254 other upstream 338695 26032979 ~ 26035638 (+) True G102332
unassigned_transcript_1961 other upstream 2146085 24228177 ~ 24228248 (+) True trnae-uuc_32
TU150835 other upstream 2157570 24216243 ~ 24216763 (+) True G102017
TU150815 other upstream 2284811 24086724 ~ 24089522 (+) True tmem35

Expression Profile