RNA id: XM_043256943.1


Basic Information

Item Value
RNA id XM_043256943.1
length 3059
RNA type mRNA
GC content 0.54
exon number 25
gene id LOC122357543
representative True

Chromosome Information

Item Value
chromosome id NC_056712.1
NCBI id CM032081.1
chromosome length 26701998
location 26401527 ~ 26429629 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAAACTCGAGCAGAATCCCGTCTCGCCTGTTCCGGAGTTTCCGCTTGGTCTCCATGGTAACGCGTCCAGACGCGCGCTCGGGATTCTTCGGCGGATCTTTGATCTTTGAGGATGTCGCGGGGTTTTGTCGATCTACCCGAAATAACGAGCGAGAACTTTGAGCAGAGTCTCTCTTCTGATCAGATCTTCATCGAGTTCTTCAATGACTTCCTGCAGCTTCCGGTGTTTGTCGTGCCGCTGAGGTATGATGGGATCTCTGCAGGCTTTGAGCTGCTGGATCACAGCGCTGAGCTCCTGTCCCGTCGGATCAGAACCGCTCTACATCAGATCCGGTCCAGAACTGTTTCTGACCCGAGCTGGACCCCGGCAGAACCCGTCCGAGACAACAGCTACAGCGTCACTCGTCTGGACCGAGAGCAGAGCGTCCGGTGGATGAAGAGCGACCGCCTGCCCTTCTTCCTGCAGAGCGACTGCTACTTTGAGTTCAGgttgACTAAACGTCTGCATCAGCTCAGCACCGGCTCTTCTTCCTCTCAGACGCTGTGCTGTGATCAGTGCCGTCTTCTGTCTGCGCAGACGGAGAAGAACAGCAGCTTCATCTCTCCAAACGAGTCCTGCAGCTCCACACACGGTGGAGCAGGTGGATGTCTTCAGCGGTGCGGAGCCAGACGGAGCTTTCTGGACTTCAGGAGGTCTCTGGTCAGCGGCCCGGGGGAGAATGTTCTACATCTGTGGATGGATATCGAACGCCTGAAGACTCTCAGCACAAAGACCAAGAGCAGGTATCTAGGGTGGATGAAGGGTCAGTATGTGGTCAGCAGCAGCTCAGCGGCTCTGAGTGAACAGATGCTCTCCAGACTGGAGCTAAACAGCACCACCTGCTGGACAgaagagagactgagagacacTCAACCCCGTCTCACAGAGACCCTGCTGCTgtactggtgtggtcAGCGCTTCTGCTTGTTTTCGTCGGGTCAGTGGCCGGTCTGTGATCATGTGTGGAGTTCTTCTGTTCATTCGGAGCTCAGCGTCTTCTtccagcctgtgtgtgtgtctgcctccGTCTGCAGGGATACTGAAgttgAGCTGGACAGCAGTGAGATTCAGACTCTACTGGAGGTTCTACACACTGAATCCAGATCTGGGttctttttcacaaattttTGTCAGAAATCAGGCCAGCAGttgtGGGAAAATGCTGTGTATTTCTGCTCAGAACTGCTGCAGTACCACCAGCTCTTCTGCCAGAGCAGATTTGATCCATACAGAGTCCAACGCACagctcagCTCCTGTACGCCTCGTACCTGAGCAGCGGCGCTCCGATGAGTGTGGACTTGAGCGAAGAACACAGAAGAACCGTTCTGCTGCGCCTGAGTCCACCGTTTGAGGATCTGTTTGACCGGACAGAAGAACACGCTCTGAGAGTCCTGCTGGAGCCCTGGACACTGATAACAGAGAGAGTCAGAGACACACTACACACtGTGACACAGTGGCAGGAGGTGTGTTTTGCCGAGGCTGAGTTGTTCCAGACGCTGCAgactctctacacacacacacacacacagagcagaatCCAGCAGGAGCTCAGGACttctccagcagagggcagcagagCGCCGAATCTCTGGTCAAAGGTTCCACCTGAGTTCCGTGGGTTCCGTCTGGATTCTCTGCTCCGGAACCGCAGGGAGCTGCAGCACTTCCAGTCCTTCCTGGAGCAGAACTCGGCCAGacagGAGCTGCAGTGCTGGCTGGATGTGGAGCAGCTGAAGAAGAGTGATGGAGCGCTGCTGAAGGAGAGAAACACCAGCATCAGAGACAAATATCTCAGCAGCAGCTTCCTGTTTGGACCCAGAAGTCCAGCTACTGAAGAACAGCAGATGAGGttgctGCAGATGTGCGGTGGATGGCAGGGTCTCCAGCGTGAGTCGGTCTCTCTGAACGTTCTCACTGAGCTTCAGTCTCTGCTTCACAATCGTCTGGAAACTCGATGGCTGCCTCTGTTTCTCTCGAGCTCACTCTTCATCACGCGTCAGCAGCAGAAGgTGACAGAAGTGGAGTGTGAGCCGCCGGTCGTCCATCAGCACAGAAGGAGATACGTGTGGAAGcaggtGTCTGGTGGTCTGATGAGTTGGTCTCAGGAGTCGGTGGCTCTCCGCAGGGCTCTCCTGAATCCTGTCACCTGTCTGCTGTTCCAGAAGTTTCTGTCTGTCCGTGATGATCTGCTGGAGAATGATCTCCTCTTCTGGCTGGAGGTTCAGAGGTACAAGgaTCTGTGTCACTCCCGCTGTGATGATGTGACTCTCCAGAGGAAGGTGTCCATCATCATCAGCTGCTTCCTCAGCTCTTCTCTTCCTCCGGGGCTGCAGGTCCATGTTCCTCCAGACGCGGTGCAGAGGGTCCTGAGTCAGCAGCGAGCGCTCGGCCCATACGTCTTCAGAGAGACGCAGgcgtGTGTGTTCGACGAGCTGCTCAAGCACTGGCCGGATTTCATGGAGCTGCTCTCCTCCGTCGGGGCGAACGAGCTTCAGAGCGtgctggagagagagacacgGAGGAGCAGAGCCACAGAAGAAGACCACAGCGCTCAGgAGCAGGAGGACGAGGCTCACGCCGTGGCTGATGAAGAGCAGCTGAACTGCTGGACTGACGGCACACGAGCGGCTACATacaagAACAGAAGAACTTCTCAGATGATCACAGCTCAAGTTTTCTTCATGGTCACTCTTCTGTCTATTATATGGATTATCTCCTGGTCGTACGCCAAACACATGGCGGATATGGAACATGAGAAAACGCAGAACAGCACAGCTGTGACGTCACCTTCCTCATCCTCATCGACTGGTCAGCGagaacacacacatAAAAAAGCTGCAGACGCACAAACACAGGACAGACGTGCATCTGATCAGAGGAAGAATAAGAAAGAACTGAAGAGCTGAAAATCGTGTTTGGGATGATGCACTGTACAGATTTAGCaaatcttatattttattaacaaaaaacagaTTCATTATATAGTGACACTGAATAAAGgaggaaaagaaataaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151415 lncRNA upstream 12828 26387946 ~ 26388699 (+) True G102423
TU151335 lncRNA upstream 123977 26220234 ~ 26277550 (+) True G102385
TU151388 lncRNA downstream 13341 26437409 ~ 26441594 (+) True G102405
TU151434 lncRNA downstream 21249 26445317 ~ 26446288 (+) True G102439
XR_006252458.1 lncRNA downstream 142105 26566173 ~ 26567356 (+) False LOC122357364
TU151488 lncRNA downstream 142250 26566318 ~ 26567621 (+) True LOC122357364
TU151489 lncRNA downstream 142250 26566318 ~ 26568442 (+) False LOC122357364
XM_043257891.1 mRNA upstream 944 26395624 ~ 26400583 (+) False fbxo43
XM_043257889.1 mRNA upstream 944 26396167 ~ 26400583 (+) True fbxo43
XM_043257808.1 mRNA upstream 17743 26374333 ~ 26383784 (+) False khdc4
XM_043257638.1 mRNA downstream 119849 26543917 ~ 26548675 (+) True LOC122357952
XM_043257564.1 mRNA downstream 148568 26572636 ~ 26579615 (+) True fzd6
XM_043257565.1 mRNA downstream 148568 26572636 ~ 26578803 (+) False fzd6
XM_043256944.1 mRNA downstream 168550 26592618 ~ 26604854 (+) True LOC122357544
XM_043256945.1 mRNA downstream 184662 26608730 ~ 26621528 (+) True LOC122357545
XR_006252567.1 other upstream 17893 26374333 ~ 26383634 (+) False khdc4
TU151318 other upstream 230125 26168558 ~ 26171402 (+) False gnrhr3
TU151254 other upstream 365889 26032979 ~ 26035638 (+) True G102332
unassigned_transcript_1961 other upstream 2173279 24228177 ~ 24228248 (+) True trnae-uuc_32
TU150835 other upstream 2184764 24216243 ~ 24216763 (+) True G102017

Expression Profile