RNA id: TU150835


Basic Information

Item Value
RNA id TU150835
length 521
RNA type TUCP
GC content 0.50
exon number 1
gene id G102017
representative True

Chromosome Information

Item Value
chromosome id NC_056712.1
NCBI id CM032081.1
chromosome length 26701998
location 24216243 ~ 24216763 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGGAGATGATCTACATACTCCAGAGCCTCCTTGAACTTAGCAGTCGCCTCAGTGTATTTACACTCTTTCACATTGAAATTGCCTTCATCTTGGAGCAGCATAATTAGCCGTAGCATCTGCTGCCAGTCCTTGCCCTCGGTCAGAGCTGTTATCCTGTGATTGGCCCCCACTGCCGACTCTTCACTTCTGGTGTCATGCTCATTTTCCCCTGCTACAGATGGATTCTTTCCCTCCTCAGCATCTTTGACTTCTTCGGGGGACTGAGAATGTTCCCCCTCACATTCCTCTTTTGCATCCATCTCAGAGATGTCCTCCTTCTCTGGTTCCTTTTCTTTGTGTCCCAGGATGTTCCAGTATCTTTCTTTATCCTCCCAGTATTTTTCCTTCATTCTCTCAGAGAGAAGACCGAGTTCTCTTTGCACCAATCGAGACAGTGTGATGTCAAGGTTGGCCACCATCTGGAAGTCCCTCCTGGCCTCCCTCTCGCTCCAAACAGCCGCGTAGGCCTTCGCCCGCTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150701 lncRNA upstream 244508 23970291 ~ 23971735 (+) False nitr14b
XR_006252587.1 lncRNA upstream 265678 23949157 ~ 23950565 (+) True LOC122358238
TU150641 lncRNA upstream 858705 23357074 ~ 23357538 (+) False LOC122357577
TU150639 lncRNA upstream 859247 23356526 ~ 23356996 (+) False LOC122357577
TU150627 lncRNA upstream 912704 23295876 ~ 23303539 (+) False LOC122357577
TU150837 lncRNA downstream 53288 24270051 ~ 24270368 (+) True G102019
TU150900 lncRNA downstream 360425 24577188 ~ 24577506 (+) True G102068
TU150901 lncRNA downstream 361440 24578203 ~ 24578529 (+) True G102069
TU150994 lncRNA downstream 841068 25057831 ~ 25059187 (+) False LOC122358267
TU151009 lncRNA downstream 873749 25090512 ~ 25145183 (+) False G102143
XM_043258029.1 mRNA upstream 5646 24101571 ~ 24210597 (+) True drp2
XM_043258027.1 mRNA upstream 5646 24101571 ~ 24210597 (+) False drp2
XM_043258032.1 mRNA upstream 5646 24101571 ~ 24210597 (+) False drp2
XM_043258031.1 mRNA upstream 5646 24101571 ~ 24210597 (+) False drp2
XM_043258028.1 mRNA upstream 5646 24153757 ~ 24210597 (+) False drp2
XM_043256882.1 mRNA downstream 12818 24229581 ~ 24266609 (+) True elf1
XM_043256884.1 mRNA downstream 21453 24238216 ~ 24266609 (+) False elf1
XM_043256881.1 mRNA downstream 21454 24238217 ~ 24266609 (+) False elf1
XM_043256883.1 mRNA downstream 30655 24247418 ~ 24266609 (+) False elf1
XM_043257433.1 mRNA downstream 175557 24392320 ~ 24444524 (+) False pcdh19
TU150815 other upstream 126721 24086724 ~ 24089522 (+) True tmem35
unassigned_transcript_1960 other upstream 164468 24051703 ~ 24051775 (+) True trnav-uac_6
XR_006252531.1 other upstream 1907131 22282292 ~ 22309112 (+) False gria2b
XR_006252530.1 other upstream 1908792 22282292 ~ 22307451 (+) False gria2b
TU150017 other upstream 2815490 21400327 ~ 21400753 (+) True G101440
unassigned_transcript_1961 other downstream 11414 24228177 ~ 24228248 (+) True trnae-uuc_32
TU151254 other downstream 1816216 26032979 ~ 26035638 (+) True G102332
TU151318 other downstream 1951795 26168558 ~ 26171402 (+) False gnrhr3
XR_006252567.1 other downstream 2157570 26374333 ~ 26383634 (+) False khdc4

Expression Profile