RNA id: XM_043257433.1


Basic Information

Item Value
RNA id XM_043257433.1
length 6226
RNA type mRNA
GC content 0.47
exon number 5
gene id pcdh19
representative False

Chromosome Information

Item Value
chromosome id NC_056712.1
NCBI id CM032081.1
chromosome length 26701998
location 24392320 ~ 24444524 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGAGACACTGAGCTGTGCATTCGACAGTATGCGCTGAAGATGCGCGCCGTGCGTTTACCTCAGTGAGCAACATTGAAGAACTACATCAAGAACTATTTCGTTTCATTCAGAGGCTGGATATTTCGGACCGGACGCTTTTATTACGGCGAGAAGAACCCAGCTTTACTTGCAAACGCTTGATTTTTCTTCACTGATCTTTCCTCGGTGTTTTATACGGatttagtttctttctttctggaCTAAGGCCAGCTGAAATACCTTCATACAAGAAATTTACGCTTGTTGAAAGAAACCTTCACTGGACAAGGCACCCACCTCTCGCTCGACTGGGAATATAGTGGACTGGACTGATAGcctattttaattcatattggTTTGCCATATTGTTCCAGTTTCAGAGACTGGactgttctcttttttttctgaaattggAATCTCTGTGGTTTCAGTTGGATATGAGCATGGACATAAATGCGGATCAAGGAGGAGACATCCTAACTTCACATTATTATATGGATTGATTGAGCATGAACGATGTTTTAAACTCATTTTCGGTCTAAGTGGTCGTCACGAACCATGATACCGAgagcaaatatttttgaatcGGATCCTtcctttcattcattcacaagTTGAGGACCTTCCAGCGGACATTTAGCCTACAtttctacagatttttttttcttctcccccCTCGCTGCCTCAAAATGGTCGGTTTACATCTCGGTTACCCTGAATTACGCAAATGTTCTCGTTGAAGCCATGTTTTTCGTTCACAATGTTTTCACGTTCTCTGTATGAAGAATTATTCGCCAGCTTTCTTCGTATTTTTCCCCCCCCAAATAACGCAAGGCATGGGTGGCCTGATAAGATTTTGATAAAGTAAATGGAAGTTATCGACTGCGTAATCAGTGAGTCAGATGAATTTCACCGCAGATACAAACATTTTCGTTCGTTTTAAAGGATGCCTACCAGACTGTGATTTTATTCCTTTGACTTGTTGGGAGTTTTTTGTACGTCCGACCGAACGTGCAtaagtttaaatgttaataaaacatcatgCAAATGAGCTTGTGAAGGCAGACATCAACAGGTACAATGCATTCCAAGGACATGGATTTCgtacaaatgtttttgtgctttctCTTGTGCTGGACTGGAGTCGATGCCGTTTACAATTTGAAATACACCGTGGAAGAAGAGCTGCGTGCAGGCACAAAGATAGCCAATGTGACGGCGGACGCGAAAAACGCGGGTTTTGCACTGGGAAACCGACAGCCTTATTTGCGGGTTATCTCCAATTCCGAGCCGCGATGGGTTAATCTGAGCCCCGCCGGACTGCTCATCACCAAGCAAAAGATCGATCGGGACGCTGTTTGCCGACAGACACCGAAGTGTTTTATTTCGTTGGAGGTGATGTCGAACTCGATGGAGATCTGCGTGATTAAAATTGAGATTATCGACGTGAACGACAACGCGCCCCGCTTCCCCACCAACCACATTGACATAGAAATCTCGGAAAACGCCGCTCCCGGTACCAGATTTCCCCTAGAGGGGGCAAGCGATCCGGACTCCGGGAGCAACGGCATTCAGACGTACACAATCACCCCTAATGATATTTTCGGTCTTGAGATTAAGACGAGGGGGGACGGGTCCAAAATCGCAGAACTTGTGGTGGAAAAGACTTTAGACCGAGAGACGCAGTCTCGTTACACGTTTGAACTCACCGCGGAGGATGGCGGAGACCCCCCGAAGTCTGGGACCGTGCAACTTAACATCAAAGTAATCGACTCGAACGACAACAACCCCGTTTTCGACGAGCCAGTATACACTGTAAACGTGCTGGAGAATTCTCCCATTAACACCTTAGTCATTGACCTGAACGCCACGGACCCAGACGAAGGAACCAATGGCGAGGTGGTCTACTCGTTCATAAACTTCGTGTCCAACCTGACCAAACAGATGTTTAAGATAGACCCCAAAACGGGAGTCATAACAGTGAACGGCGTTTTGGACCACGAGGAGTTGCCCGTCCACGAAATTGACGTACAAGCCAAAGACCTGGGTCCGAATTCAATCCCTGCCCACTGCAAAGTGATCGTTAACGTAATCGACATCAACGACAACGCGCCAGAAATAAAACTGTTGTCGGAAAACAGCGAGATGGTAGAGGTGAGCGAAAACGCTCCTCTCGGATATGTAATAGCCCTGGTGAGGGTCTCAGACAATGATTCGGGAGCGAATGGAAAAGTGCAGTGCAGACTGCAGGGCAATGTGCCTTTTAGACTCAACGAGTTCGAGAGCTTCTCCACCTTACTTGTTGATGGCCGTCTGGATAGGGAGCAGAGAGACATGTACAATTTGACCATTCTGGCCGAGGACAGCGGGTACCCCCCGCTCAGAAGCTCGAAATCCTTTGCAGTGAAAGTAACGGATGAAAACGACAACCCCCCGTACTTCACCAAACCACACTATCAAGCCATGGTCCTCGAAAATAACGTGCCAGGTGCGTTTCTGCTGGCGGTGTCCGCCAGGGACCCTGACCTGGGCATGAACGGCACCGTGTCCTACGAGATCATCAAATCGGAGGTGCGGGGCATGTCTGTGGAATCTTACGTCACCGTGAACTCGAACGGCGAAATATACGGCGTTAGGGCTTTTAATCACGAAGATACGCGGACCTTTGAGTTTAAAGTCTCTGCGAAGGACGGGGGAGATCCACCTTTGACCAGCAACGCCACCGTGCGCATTGTTGTACTGGATGTAAACGACAACACACCTGTGATGACCACCCCGCCTCTGGTGAACGGTACCGCGGAGGTGTCCATTCCTAAAAACGCTGGAGTTGGTTATTTGGTTACGCAAATAAAAGCTGATGATTACGACGAGGGGGAAAACGGAAGGTTAACGTATTCGATTTCAGAAGGAGACATGGCATACTTTGAAATAGACCAGATAAACGGCGAGGTGCGAACCACTAAGACGTTTGGGGAGAACGCGAAACCGTCCTATCAGATAACCGTGGTGGCGCACGACCACGGCCAAACTTCTCTATCCGCTTCCGCCTACATTGTCATTTATCTCTCTCCTGATCTCAACGCTCAGGAGCAAATCGGACCCGTCAACCTGTCTCTCATTTTCATCATTGCCCTGGGTTCTATTGCAGTCATCCTGTTCGTCACAATGATCTTTGTGGCAGTCAAGTGCAAAAGGGATAACAAGGAAATCCGAACATACAACTGCAGTTTCTTGTACCTGCGCAGGGTGGCGGAGTACTCCTACGGCAACCAGAAGAAGTCCAgcaagaagaagaagctgagcAAGAACGACATCCGGCTGGTGCCGCGGGACGTGGAGGAGACGGACAAGATGAATGTGACGGAGAATTATTCCATTGACTCCAGTTATGTAAACAGCAGAGCACACCTAATTAAAAGCACGTCAACATTCAAGGACATGGAAGGAAACAGTCTAAAGGACAGTGGCCACGAGGAGAGCGACCAAACCGACAGCGAACATGATGTTCAGAGAGGGCACTACGCCGACACAGCTGTCAACGACGTACTGAATATGACCGTACCCCCCAACAACTCGCAGCTACCTGACCAAGatcagTCCGAAGGTTTCCACTGCCAAGATGAATGTCGTATCTTGGGCCACTCGGACCGCTGCTGGATGCCCCGGGTGCCGATGCCAGCGAGAGCGAAGTCTCCCGAACACAGCCGCAACGTCATCGCTCTGTCCATCGAGGCCACCACTGTGGACGTACCTCACTACGAGGACTGTGGCACCATCAAAAGGACTTTTGCCACCTTTGGCAAAGACGGGGCAGATGAGGAGCGGGCCGAACAGAGGGGCAGGCGGCAAACGGCGGAGCCGGCCGTCTGCAGCCCTAAGACCAACGGCACCGTGCGAGAGGCCGGAAACGGCCGGGAAGCCGTAAGCCCCATCACCTCCCCGGTGCACCTGAAGAGCCCCCAGTCCAAACCACCCTCCACCTACAACACGCTGAAATGCAGGGATGCGGAGCGCATAGCCAACCACAGCCTGCTGCGGCAGCCGGAGGGGAAGGACAGTGAGCCGGCCATGCGGGAGATCAACACGCTCCTGCAGGACGGCCGTGAGAAGGAGTCCCCCGGCAGCAAGCGGCTGAAGGACATCGTGCTTTAACCGGCTCCCGCCTGTACACAGAGCGCACGCACTACTACGAGTGTGTGTCgacgtgtgcgtgtgtgtgtttttgtgtgcttttgcaAGCGTCGAGCCGAACGGGCCTGGGGAAGGGAGACACATGCGCAGCACAACGTATTCTCCAGAGACCGAACAAACGAAGCTGAAAATGTGTCTGCGAGCTCAGACCGTCATCGTGGCTTGGTAGTAACAGCAGCGCTTGTACGTTCGTCGCAATCGTCTGTCCGCAGTGGACAGGCTGGTTACTGTGTGCTGCGCAACGCGCTCCACCCCTGCCCTCACGTCTTACCCTTAAGAGGAGAAAGACCTTCTAGTGCACCGCTGGTGACTCCCAAGTACAGTCATGCCTTGTAGACTCTAAAGAGACTTCTAACTTTCTTCTAATGCCTTCTTTGGTATGCAGTTTTTGCTTCAGCTGCCAAACCGCTCACTGTTCCCGAAGAGGACGTGGGTCTCTCTGACGCTACGGATGGCGAGACTCTTCCCGCCTAACACGAGCGGTCCGACCGATCGCGCACAGGAACACTTCTGCAgatctcatttcatttcagtggCTTCTCACTGGTCTGATAAGACAACCCTTCTCTGTTTCCCTCAAGACATTCCAGTGTCAGCAAACCATGAGGTTGTTACAGTGCTTATTTTTTATCACAGATGGAGCTAAATGAAGTTGCGCTATCAGCTCAAGCTCACCGAAAAACTGGAATAGGGAGAGACCGATCCCCCAGACTTACAGccagatataaatatatatatacgaataaaaagaagaaaaaaaaaaaacatcagactTGTTGCTTTTGAAATCTCCTGTGCCCTTTCCTGATTGTAGCCAGTGGAGCGCAGTTTACTAGAACTTCGTGCTCTGGTCTTGTACTTTTTTGGATTTTGACTATGGGGCTAGGATAGAAGGGGTCGTCACTTACGTCTTGCTATGTGAAACTCTGTTTAGGGTTTACTactatcatttttaataatctgttGTTATGTGACAATccctttaatgttttgttgcgaaagtaaaaactgaaaaaataaacattggtGTTCAACTAAAGCTACAGTAGCGtttgtacacaaacacaaaaaggaaaaaaaaaaacatatatgccaaaatatattttataaataatttaaaatgtataatgagaATATTTAATGCTGTGTAGTTATTTTATCAGTAAGTTATACTTGAAATTAActggctttttttctttatttgtccCCTTTTTATTGACtctgttattcatttttttttttttttttcaattgatcTTGAATTTTTGTTCACTGTGTTACCCCTGGCAACTGTTGATTGCAGTCTACCTTGTTGTAAAAGAGTTTCTTATTGGTCAGTTCTTGTGCCATCAAGTTTCTGTGTGggcaaaaaaagtgaaaaaagacaaaaaaaattataaaaaaagaaaaaaaaaatcaacaccaACAGTAGTGTGTCAGTACAATGAGCTTAGAGTGAGATAgcaaaagaaaccaaaaaactgCGACAAACATTAAACTTTCAAGATAGCAGGTTGTTGTTTAATCTTAATACTCAAGTAAGGGTAAGAGTAACACCACCATTTCAAGTCACTCAAGGCAGTTCCACTCATTTCTGAAGTGTTTAAGGAGGATCTAAATGGATATAAGTTAAATGTAAAGCAAACCCAGACGCTCTGAGACAGACTTGCTTTGCTATCTATCATCGAGTACAGCCCTCCATTTTTCCAGATCATTTAAGAACGTTGTACCAAGCCCAACCAAAcaagtttgttgttttctttctgtaagaggaaaaaaaacagatttggtGGAATTGCCATAGAGGGGGAACCGGAGAGAAATTGCAAAATCAGTTTCTTTGCAATACTTGTTTTATAATGTGGGAAGTACAAACAGCAGCAACGTGTGAAAAAGATATAGATCTAGTAGCTGAATGTTTTTGCTGGTCTCACCAAACAGCTTCTGGCAACATGAAAAACGGAATTATCACTGAATGTATACTGCAGcttattattaaactattaaatgttCTCCA

Function

GO:

id name namespace
GO:0048854 brain morphogenesis biological_process
GO:0001841 neural tube formation biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150837 lncRNA upstream 121952 24270051 ~ 24270368 (+) True G102019
TU150701 lncRNA upstream 420585 23970291 ~ 23971735 (+) False nitr14b
XR_006252587.1 lncRNA upstream 441755 23949157 ~ 23950565 (+) True LOC122358238
TU150641 lncRNA upstream 1034782 23357074 ~ 23357538 (+) False LOC122357577
TU150639 lncRNA upstream 1035324 23356526 ~ 23356996 (+) False LOC122357577
TU150900 lncRNA downstream 132664 24577188 ~ 24577506 (+) True G102068
TU150901 lncRNA downstream 133679 24578203 ~ 24578529 (+) True G102069
TU150994 lncRNA downstream 613307 25057831 ~ 25059187 (+) False LOC122358267
TU151009 lncRNA downstream 645988 25090512 ~ 25145183 (+) False G102143
TU151022 lncRNA downstream 671346 25115870 ~ 25116759 (+) True G102148
XM_043256882.1 mRNA upstream 125711 24229581 ~ 24266609 (+) True elf1
XM_043256884.1 mRNA upstream 125711 24238216 ~ 24266609 (+) False elf1
XM_043256881.1 mRNA upstream 125711 24238217 ~ 24266609 (+) False elf1
XM_043256883.1 mRNA upstream 125711 24247418 ~ 24266609 (+) False elf1
XM_043258027.1 mRNA upstream 181723 24101571 ~ 24210597 (+) False drp2
XM_043256842.1 mRNA downstream 545361 24989885 ~ 25023912 (+) True glra4a
XM_043256841.1 mRNA downstream 545371 24989895 ~ 25023912 (+) False glra4a
XM_043256843.1 mRNA downstream 592120 25036644 ~ 25040781 (+) True gla
XM_043256839.1 mRNA downstream 596900 25041424 ~ 25051414 (+) False btk
XM_043256840.1 mRNA downstream 596923 25041447 ~ 25051414 (+) True btk
unassigned_transcript_1961 other upstream 164072 24228177 ~ 24228248 (+) True trnae-uuc_32
TU150835 other upstream 175557 24216243 ~ 24216763 (+) True G102017
TU150815 other upstream 302798 24086724 ~ 24089522 (+) True tmem35
unassigned_transcript_1960 other upstream 340545 24051703 ~ 24051775 (+) True trnav-uac_6
XR_006252530.1 other upstream 2084869 22282292 ~ 22307451 (+) False gria2b
TU151254 other downstream 1588455 26032979 ~ 26035638 (+) True G102332
TU151318 other downstream 1724034 26168558 ~ 26171402 (+) False gnrhr3
XR_006252567.1 other downstream 1929809 26374333 ~ 26383634 (+) False khdc4

Expression Profile