RNA id: XM_043258083.1


Basic Information

Item Value
RNA id XM_043258083.1
length 3703
RNA type mRNA
GC content 0.44
exon number 27
gene id itga6l
representative False

Chromosome Information

Item Value
chromosome id NC_056712.1
NCBI id CM032081.1
chromosome length 26701998
location 23979011 ~ 23990098 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGTGCTATTGTATGTCGACTGCAATACTCGTTTTGAGCTAGCTCAAAATGCACTAAaagtaaaatgtcttttgttcatttgtccAACACGAAATGCATGGTACAGCTGTTGAAGGAACAAATTTACCCAACACTGGCATAGAACTTCCATTCAGAACTCGACTACGCCTGCCAGGCGATGATTCAAGATGAAAGGGCATGTGTTCAGGTTTCCTTTACAGTCCACATCCAGCTCCGCAGACGTCTATCATGTTGTTCAGTCAGTGGGCTCTCGTCTTGACCGTGTGGGTGCTTCGTGCGGAGGTTTCGTCTTTTAACCTGGACACGCAGAACGTGATGAACAAGCGTGGAGAAGCTGGCACTTTGTTTGGGTTTTCTATGGCCATGCACCATCAGCTCAAACCTTCAGAGGAGCGAGTATTGCTGATTGGAGCCCCTCGCGCTAAAGCGTTGCCCGGTCAAAATGCCAATATATCTGGAGGTCTGTACAGATGTACATTCACAAACCCCTCTGATTACTGTGAACGCGTTTCTGTTGATATAAAAGAACGTCCCTCAAACAATCCTGGACAAGATTATAGAGAAAATCAATGGCTGGGCGTCCGTGTTCAAAGTCAGGGACGAGGAGGCAAAGTAGTGACTTGTGCCCACCGGTACCAGGATTGGAGCTACGATAACCAGCGGCTGTTGGGGAGATGTTTTCTCCTGGAACAGGACCTTAAGTTGGTGGCGGATGGAGAGTCCACGAGAGCAATTTGTAAGAATAGGGAAACAGATAAGCACAAGTTTGGCTACTGTCAACAAGGGGTCTCTGTAGCGTTCTCCAAAGACAacaaatatatcatttatgGAGCTCCAGGAGCGTATGACTGGAAAGGCATTGTGCACATGGAGCCCGTTGATAACTTCGCTATAGAGACCTTTGAAACAGGAGATCATAATCAGCGTCAACACAAGCTTATTCCTGTGGACATCAGCAGCCTTTTAGgaTTTTCTGTCGATACTGGGATGAACCTCATGAAAAAAGGAGAGCTGAATGTTGTGGCCGGGGCTCCACGATCAAAGCACAGCGGGGAGGTTTTGCTGCTCAGACCGGAAGAAAAGGCAGAAACAAGGAATCTGAAAGCTGAGTACATCCTGCAAGGTCCAGGTTTGGCCTCTTCCTTTGGCTACGACCTCGCTGTTCTTGACTTAAATGGAGATGGGTGGGATGATCTTGTTGTGGGTGCTCCCGAGTTCTCCGCAATAAACATGGACAGAGATGTGGGAGGAGCTGCGTATGTTTACATCAACAAAGCTAAAGGACAGCGCTGGAACCAAATCGAGCCCGTTTGTCTGTATGGGAAAAAGGACTCCATGTTTGGACTAGCGGTGGCACATATTGGGGACATCAATCAAGATGGATACCAAGATTTTGGAGTGGGCGCTCCTAATGAGGATACAGGGAGAGGTCGAGTGTACATATATCATGGGTCAGCTGACGGGTTTCAGGAAAAACCAGAGGTTATAGATGCTGGAGACCCTAGTGTCAAATCATTTGGTTATTCTTTGGCTGGAAACATGGATTTAGACGATAATGGCTATCCAGACCTTGCCGTGGGTTCACTTTCAGATAGCGTGCAAGTTTATAGgagTAAACCAGTGGTAAACATAGAAAAGACCTTAACATTAACCCCGAATACTATTGATTTTAAGGCTCAGGACTGCAAGAGATTTTCATGcGATATTACAGCCCAGTCCTGCTTCACTTACACTGCCCAGACACCTACATACAATGACAAACTGAGGATCAAGTACACGCTAAAAGCTGATACACTGCGGAGAGAGAGGGGTCTTCGCTCACGAGTGGTTTTTGTGAATTCTGAGGCTGCGCAGGGTTACCAGGAACTGTCTGTTCAGGGCAAACAAGAGTGTATCCAGACCAAGCTCAGGCTGCTGGGAGACATCCAGGATAAGCTGACCAGCATTGTCGTCATCCTGTCTGTTTCTTTGCCATCTAACAATCCGAAACAGGCCGTCAGAAACTTCCCTGGGTTAGAGCCGGTTCTGAACGCTATGCAGGACATTACAACCAAAGCAGAGGTCGCCTTTAGAAACGCCGGATGTGGAAGTGACAATATCTGTCAGAGTAACCTGCAGCTCGAGTATAGGTTCTGCACCAAAGACCAGCAACGAGACAAATGTTTCCCTCTGTCCATGGAAAATGATATTCCTGTCATTTCGCCTGGTGATAAAAATGTTGCCCTGGAGGTCACTGTAAGCAACATAGGTGGAGATGACGCACACCAGAGTCAGCTTTCTGTGGCGTTCCCAGAATTTCTGCCGCTATCGTCAGTCGAGCCAAAGAAGAATAGCGAAACTCAGGTGCTGTGTAAcccaaatgaaaataaaacacaggctGCCTGCCAACTCGGAAATCCTTTTAAAAGAGACTCTGAGGTTTCCTTCTTCCTGATACTTAACACAGAAAGGCTTTCCTTGAGGGTGACAAGCGCTAATGTAACTATGTTGCTGAAAACGATCAGCATTCAAAATATTCCAGTAGTTGTTGCAGAAGCAAAAATTATCTTTGAACTCTATCTGAAAGTAGCCGGCCTGGCTAAACCTTCCCAATTATTCTTTGGAGGAGAAGTTAAAGATTTGAAAGCCATGAAATCAGAAGAAGATATCGGCTCTTTGGTCCAATATGAGTTCAGGTGGCCAAATGCGACCAAAGAAGGAAAACGGCTCCTGTACCTTATGCAGATCGAGAATCATCGGAAAAATATTATTCACTGCACGCCAGGAGAGGCAACCAACCCACTCCGATTTAACAAGGCATCATCCAGAGGACGGCGTGAAGTAGAGCATGAATCAAGCCTGAAGGCTCTCGCCTCTAtagattttttcccctttttggaCAACATAAGAAAGTATAAAACCCTGACATGTGATGATGAAATAGACTGTGTGGAGATAAAGTGCCCTCTTGAGGAAGTGGACAGCACTACAGCCGTTGTTCTTCACGCGCGTTTATGGAACAATACTTTTCTCGAGAAGTACGGTTCGTTGAACTACTTGGATATTGTACTGGATGCATATTTGACTCTTAATGCAACTCAGAAGAATATCGGGATGCAGCCACCCGATACCAAGGTGAAGCTAACAGTTTTTGGTGAAAGAAGGCCTGCTTTGCTCAGTAAAGTCCCATGGTGGGTCATTCTGCTCAGCATACTGACTGCACTGTTTTTACTGGGTCTTCTCTTCTACCTGTTAAGAAAGTTTGAATGCTTGAATTGCGGAGTGTGTGCTCAAGAAAAGAAGATATACTAAGAATCAGGACAGGAACATATGCCAAACAGAGTTGTATCTTCTCCGTTTTCTAATtctgcagtgatttttttttttttttttttttttgcacaggtcaaaaaaaagtttttttttttctttcttttttaatgtttttgtatattgtctGTAAATACAATTTGATGATTAATAACTGATTTGTCTACCCGCAAAAAGTTGTAAGCATCTTGCATCGCTAAGGGCAAATGCTGCTATTCTGCTTATATCACATTTGATTAACATTGTTTGTCGTCTTATAATGTTAATCATAAATCCGAATCTATTTAATGTAGTGAAAgaacaatttacatttacatagtAATGTGCGCTGTTTGCAGTAATGTTGGTGGTACAGTAAAATGTCCTTTTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150701 lncRNA upstream 7276 23970291 ~ 23971735 (+) False nitr14b
XR_006252587.1 lncRNA upstream 28446 23949157 ~ 23950565 (+) True LOC122358238
XR_006252497.1 lncRNA upstream 620319 23267299 ~ 23358692 (+) False LOC122357577
TU150837 lncRNA downstream 279953 24270051 ~ 24270368 (+) True G102019
TU150900 lncRNA downstream 587090 24577188 ~ 24577506 (+) True G102068
TU150901 lncRNA downstream 588105 24578203 ~ 24578529 (+) True G102069
TU150994 lncRNA downstream 1067733 25057831 ~ 25059187 (+) False LOC122358267
TU151009 lncRNA downstream 1100414 25090512 ~ 25145183 (+) False G102143
XM_043257904.1 mRNA upstream 6762 23970152 ~ 23972249 (+) True nitr14b
XM_043257905.1 mRNA upstream 6762 23970152 ~ 23972249 (+) False nitr14b
XM_043256649.1 mRNA upstream 32236 23918709 ~ 23946775 (+) True fgfrl1b
XM_043257611.1 mRNA upstream 520461 23446370 ~ 23458550 (+) True pcdh10b
XM_043256983.1 mRNA upstream 712492 23262084 ~ 23266519 (+) True eif4ea
XM_043257293.1 mRNA downstream 26824 24016922 ~ 24021170 (+) True tspan7
XM_043257294.1 mRNA downstream 31561 24021659 ~ 24023618 (+) True mid1ip1l
XM_043257562.1 mRNA downstream 64608 24054706 ~ 24063276 (+) True cstf2
XM_043257563.1 mRNA downstream 64608 24054706 ~ 24063276 (+) False cstf2
XM_043257604.1 mRNA downstream 85377 24075475 ~ 24086406 (+) False arl13a
XR_006252531.1 other upstream 1669899 22282292 ~ 22309112 (+) False gria2b
XR_006252530.1 other upstream 1671560 22282292 ~ 22307451 (+) False gria2b
TU150017 other upstream 2578258 21400327 ~ 21400753 (+) True G101440
TU149764 other upstream 2926579 20956794 ~ 21052432 (+) False G101250
TU149758 other upstream 2999612 20930483 ~ 20979399 (+) True G101246
unassigned_transcript_1960 other downstream 61605 24051703 ~ 24051775 (+) True trnav-uac_6
TU150815 other downstream 96626 24086724 ~ 24089522 (+) True tmem35
TU150835 other downstream 226145 24216243 ~ 24216763 (+) True G102017
unassigned_transcript_1961 other downstream 238079 24228177 ~ 24228248 (+) True trnae-uuc_32
TU151254 other downstream 2042881 26032979 ~ 26035638 (+) True G102332

Expression Profile