RNA id: TU149847


Basic Information

Item Value
RNA id TU149847
length 447
lncRNA type inter_gene
GC content 0.27
exon number 2
gene id G101316
representative False

Chromosome Information

Item Value
chromosome id NC_056712.1
NCBI id CM032081.1
chromosome length 26701998
location 21159573 ~ 21239009 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cgtaatttttttttatttgataaaccTTACATTCAgtatcacaatatatatatatatttttaaaaaaacatgactgtagctatgttttgcatttgtggCTAAGGTTGTGTAGTTGGCTGGCACAATTTCTTTAAAGGGAAGCAACAAGGCAAATGGATTGACAGACCGACACTTCTTAAcacatgtattttttacatacacacagatatacacatacacatacacatacatatatctatctaataaaatagattttagatTGTCTTAGTTGTTTTACTTCTCAAAGTTCCTGTTAACAGCCTACCTGATTATGCCACTCATGTGTTTAGGACTGCAGGAGCAAAATGcaatatcaataaaacaaacttttatttgctTGAACAaaataatggttaaaaaaaaaaatttatatatatatatatatatatatatatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149852 lncRNA upstream 48265 21177046 ~ 21178830 (+) True G101320
TU149768 lncRNA upstream 174663 21048348 ~ 21052432 (+) False G101250
TU149766 lncRNA upstream 174663 21048885 ~ 21052432 (+) True G101250
TU149727 lncRNA upstream 390437 20825405 ~ 20836658 (+) False G101229
TU149728 lncRNA upstream 393673 20825405 ~ 20833422 (+) True G101229
TU149870 lncRNA downstream 3205 21242214 ~ 21247020 (+) True G101326
TU149882 lncRNA downstream 15870 21254879 ~ 21256017 (+) True G101336
TU149860 lncRNA downstream 17072 21256081 ~ 21280613 (+) False G101322
TU149856 lncRNA downstream 21011 21260020 ~ 21280613 (+) True G101322
TU149857 lncRNA downstream 21011 21260020 ~ 21280613 (+) False G101322
XM_043257178.1 mRNA upstream 75605 21139957 ~ 21151490 (+) True tex11
XM_043257144.1 mRNA upstream 145932 21067247 ~ 21081163 (+) True lnx2b
XM_043257141.1 mRNA upstream 145932 21067247 ~ 21081163 (+) False lnx2b
XM_043257143.1 mRNA upstream 145932 21070331 ~ 21081163 (+) False lnx2b
XM_043257779.1 mRNA upstream 191837 21032174 ~ 21035258 (+) False nkrf
XM_043257417.1 mRNA downstream 979 21239988 ~ 21241994 (+) True pdzd11
XM_043257243.1 mRNA downstream 38018 21277027 ~ 21279192 (+) True sowahd
XM_043257246.1 mRNA downstream 48041 21287050 ~ 21287731 (+) True ndufa1
XM_043257284.1 mRNA downstream 54101 21293110 ~ 21296773 (+) True zbtb33
XM_043257202.1 mRNA downstream 67404 21306413 ~ 21312695 (+) True atp1b4
TU149764 other upstream 174663 20956794 ~ 21052432 (+) False G101250
TU149758 other upstream 247696 20930483 ~ 20979399 (+) True G101246
TU149644 other upstream 624960 20600673 ~ 20602135 (+) False LOC122358150
TU149269 other upstream 1876545 19349259 ~ 19350550 (+) True G100926
TU149239 other upstream 1931917 19290370 ~ 19295178 (+) False cxcl14
TU150017 other downstream 161318 21400327 ~ 21400753 (+) True G101440
XR_006252531.1 other downstream 1043283 22282292 ~ 22309112 (+) False gria2b
XR_006252530.1 other downstream 1043283 22282292 ~ 22307451 (+) False gria2b
unassigned_transcript_1960 other downstream 2812694 24051703 ~ 24051775 (+) True trnav-uac_6
TU150815 other downstream 2847715 24086724 ~ 24089522 (+) True tmem35

Expression Profile