RNA id: TU149644


Basic Information

Item Value
RNA id TU149644
length 716
RNA type TUCP
GC content 0.51
exon number 3
gene id LOC122358150
representative False

Chromosome Information

Item Value
chromosome id NC_056712.1
NCBI id CM032081.1
chromosome length 26701998
location 20600673 ~ 20613534 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttttttttgtttttgttttttaccatAGTTTTTAACGTCGCGCGTCCTGCATCAAAAGCCCCGAAACTAAAGAGCGTCGTGTTCCTTTAAGAGCGGACCCCCCCTCGGCTCATCTCGGCTGTCAATCATCGTCGGTCTCTTTGATCTTCGCTGTTCTAAAGCTCGGCTGTTTGTTACTTTCAAGTCGCGCCGATCGTCACAGCATAAAGAACTTTTCCTCTCTCCCGCGAGTCTCAAACGCTCTTCCGAGCGCGGAAAACAGCGACGACGACAATCAAAAGTGCGTTAATAAAGTTCGCTCGAATATGCCGCAGCTGAACGGTGGAGGGGGAGATGATCTCGGGGCGAATGATGAGATGATCGCGTTTAAAGATGAAGGAGATCACGAGGAGAAGATCCGAGAGAGCGCGTTCACGGAGAGCGACTTGGCTGATCTCAAATCATCTCTGGTCAATGAATCCGAGATCAGCCAGAACTCAAACTCAGCCGTGATCAGAAGAGGACAGCAGGAAGTTCAGAGAATCTACGCCGATAAACGAGAACATCTGGACGACGTGCCCAAGCATCAAGATGGTGGAATGTACAAAGCGCCGTATTCTGGATACCCGTTCCTGATGCTGCCTGAGCCGTATCTCCCGAACGGACCCGTCTCTCCATCTGTAAGTTCACGACAGCGCCGCCGTCCTTCCCCGAGCGTTTGTTCACTGGAGTCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149411 lncRNA upstream 337194 20058095 ~ 20263479 (+) True G101024
TU149408 lncRNA upstream 340082 20055187 ~ 20260591 (+) True G101022
TU149383 lncRNA upstream 401970 20001360 ~ 20198703 (+) True G101007
TU149412 lncRNA upstream 542011 20058095 ~ 20058662 (+) False G101024
TU149390 lncRNA upstream 615860 19847285 ~ 19984813 (+) True G101011
TU149650 lncRNA downstream 14532 20616667 ~ 20617157 (+) True G101176
TU149651 lncRNA downstream 15134 20617269 ~ 20617610 (+) True G101177
TU149654 lncRNA downstream 20488 20622623 ~ 20623000 (+) True G101180
TU149689 lncRNA downstream 132598 20734733 ~ 20782076 (+) True G101200
TU149699 lncRNA downstream 187025 20789160 ~ 20789454 (+) True G101210
XM_043256933.1 mRNA upstream 8207 20591158 ~ 20592466 (+) True LOC122357532
XM_043257853.1 mRNA upstream 941529 19655587 ~ 19659144 (+) True mars2
XM_043256850.1 mRNA upstream 991412 19604952 ~ 19609261 (+) True fgf1a
XM_043256846.1 mRNA upstream 995801 19584209 ~ 19604872 (+) False nr3c1
XM_043256847.1 mRNA upstream 995801 19584209 ~ 19604872 (+) False nr3c1
XM_043256934.1 mRNA downstream 16607 20618742 ~ 20622385 (+) True LOC122357533
XM_043257610.1 mRNA downstream 193091 20795226 ~ 20798976 (+) True f9a
XM_043257781.1 mRNA downstream 422417 21024552 ~ 21030351 (+) True arr3b
XM_043257780.1 mRNA downstream 422417 21024552 ~ 21030351 (+) False arr3b
XM_043257777.1 mRNA downstream 428398 21030533 ~ 21035258 (+) False nkrf
TU149269 other upstream 1250123 19349259 ~ 19350550 (+) True G100926
TU149239 other upstream 1305495 19290370 ~ 19295178 (+) False cxcl14
TU149047 other upstream 1676412 18922415 ~ 18924261 (+) True G100796
TU149048 other upstream 1676412 18922498 ~ 18924261 (+) False G100796
TU148907 other upstream 2109958 18484100 ~ 18490715 (+) False mtnr1al
TU149758 other downstream 328348 20930483 ~ 20979399 (+) True G101246
TU149764 other downstream 354659 20956794 ~ 21052432 (+) False G101250
TU150017 other downstream 798192 21400327 ~ 21400753 (+) True G101440
XR_006252531.1 other downstream 1680157 22282292 ~ 22309112 (+) False gria2b
XR_006252530.1 other downstream 1680157 22282292 ~ 22307451 (+) False gria2b

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000014_00598970_00627308.mRNA True 2912 mRNA 0.42 9 CI01000014 597337 ~ 627399 (+)