RNA id: TU149699


Basic Information

Item Value
RNA id TU149699
length 295
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G101210
representative True

Chromosome Information

Item Value
chromosome id NC_056712.1
NCBI id CM032081.1
chromosome length 26701998
location 20789160 ~ 20789454 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaatacatttctgacatATAAAGAACTGAAATAAAGTTACCAAAACtgttaatctaaaaaaaaggtacaaaagcagTTACTAAAGCTACATCATTTTTTAAGGTACACATTTGCACCTTATTTCCCCTAAAAGTTGACACATTAGTACTCTGAAGGACATGGTGTCAGACATCTCCACACACATCTCCTCGATTAAAACTCATCTAATATGATAAAGTACAGCTAGCCTGTAGTTCAAGAGAGAGAGTCCAAAGAAATGCGTTTACGGTTTTGAGCACACATAAAGTAGCTATT

Function

GO:

id name namespace
GO:0030203 glycosaminoglycan metabolic process biological_process
GO:0006022 aminoglycan metabolic process biological_process
GO:0006023 aminoglycan biosynthetic process biological_process
GO:0006024 glycosaminoglycan biosynthetic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149689 lncRNA upstream 7084 20734733 ~ 20782076 (+) True G101200
TU149654 lncRNA upstream 166160 20622623 ~ 20623000 (+) True G101180
TU149651 lncRNA upstream 171550 20617269 ~ 20617610 (+) True G101177
TU149650 lncRNA upstream 172003 20616667 ~ 20617157 (+) True G101176
TU149411 lncRNA upstream 525681 20058095 ~ 20263479 (+) True G101024
TU149727 lncRNA downstream 35951 20825405 ~ 20836658 (+) False G101229
TU149728 lncRNA downstream 35951 20825405 ~ 20833422 (+) True G101229
TU149768 lncRNA downstream 258894 21048348 ~ 21052432 (+) False G101250
TU149766 lncRNA downstream 259431 21048885 ~ 21052432 (+) True G101250
TU149846 lncRNA downstream 370119 21159573 ~ 21228265 (+) True G101316
XM_043256934.1 mRNA upstream 166775 20618742 ~ 20622385 (+) True LOC122357533
XM_043257932.1 mRNA upstream 175626 20600810 ~ 20613534 (+) True LOC122358150
XM_043256933.1 mRNA upstream 196694 20591158 ~ 20592466 (+) True LOC122357532
XM_043257853.1 mRNA upstream 1130016 19655587 ~ 19659144 (+) True mars2
XM_043256850.1 mRNA upstream 1179899 19604952 ~ 19609261 (+) True fgf1a
XM_043257610.1 mRNA downstream 5772 20795226 ~ 20798976 (+) True f9a
XM_043257781.1 mRNA downstream 235098 21024552 ~ 21030351 (+) True arr3b
XM_043257780.1 mRNA downstream 235098 21024552 ~ 21030351 (+) False arr3b
XM_043257777.1 mRNA downstream 241079 21030533 ~ 21035258 (+) False nkrf
XM_043257776.1 mRNA downstream 241666 21031120 ~ 21035258 (+) True nkrf
TU149644 other upstream 187025 20600673 ~ 20602135 (+) False LOC122358150
TU149269 other upstream 1438610 19349259 ~ 19350550 (+) True G100926
TU149239 other upstream 1493982 19290370 ~ 19295178 (+) False cxcl14
TU149047 other upstream 1864899 18922415 ~ 18924261 (+) True G100796
TU149758 other downstream 141029 20930483 ~ 20979399 (+) True G101246
TU149764 other downstream 167340 20956794 ~ 21052432 (+) False G101250
TU150017 other downstream 610873 21400327 ~ 21400753 (+) True G101440
XR_006252531.1 other downstream 1492838 22282292 ~ 22309112 (+) False gria2b
XR_006252530.1 other downstream 1492838 22282292 ~ 22307451 (+) False gria2b

Expression Profile