RNA id: XM_043257778.1


Basic Information

Item Value
RNA id XM_043257778.1
length 2973
RNA type mRNA
GC content 0.47
exon number 2
gene id nkrf
representative False

Chromosome Information

Item Value
chromosome id NC_056712.1
NCBI id CM032081.1
chromosome length 26701998
location 21030533 ~ 21035258 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGACACTCGACACGTTCAGAATTTTTGTCTTCTCCTCGAGATGAAGTGAATCGTTACCTTCATGACATGCACTCATGTGCGATTCATATTCAAGCACGAATGAGAAGTGTTTTGCGGGGGATTCCAGGTGAAGAGCCCATGAGGAAGATGCCAGTGTCAAAATTTACATCCAGACCTCGATTTGAACCGGTACACTTTGTCAGTAGCGGAAGTAGCGGCAGTGGAATAGGAGCAATGGacgaaaaagaaaatgagaaggAGCGCAGGAGGGGTGAGATGAATGACATTAGACAAAGGGAACTAGATCACCCACCATATAACGGTAACCGTGGCAATGGCTCCTCTTCCTCCCCGGGCTCTCTTGAGACCGGGAGGTATGGCTATGATTCTTGGCCTGAGCACAGAAGTAAGGACATGGCCTCGAGCAGCACAAGCGGGCTTGGCTATGGCAGCAGAGGGCCCACTCCGAACTTCATGGGCAAACTGCAGCAGGAGTACACTGCTAGATACGAGTCACATACTGGCAGACAATCAGAATCATACTCACAGGCAGGCCGAGCTGATGGATACGGAGGGTCCGGAGCCTGGGATAGTGGACGGCATGGACTGGGATTTGGACATCAGGACAGGCCGACCTCTAGCGCTGCTTTCAGCAGGGTATACGAAGGTCCAAGCAGAGGTGGCTCTGGCCTTCTCCCAACACCTTCACTGCCGTCCTCCTTCCCCGCATCAACAGTTGATGAAAAACAGAGACTTATTACCAGAGTAGCGTCCGCCGTTGCTGTTACCTTGAGAGATCCAGCGTTCATGAGTGGACCTGACATGCCAAACTACAATTTCATACTCAGCCGCAGCATTCAGGCTTGCAAGACCAACCCAGAGTACATCTACGTTAACTTAAGAGATATTCCACCCGCTGACCTccctaaaaacagaaaagtacCCTCTGAAGGATATGCATGTGAACTAAGGTGTCAGTCCCTGTACCTTGCCACTGGGTACTCTGGGAGCAAAAATGGTGCCAGAGACCGAGCGTCAGAACAGGCCGTCAAGCTGTTCATGAGGCCGGTGGAAATTCGTATTCTGCAACGGCAATACAAGCGTACTTGCGTTAATGACATGGTGGTTTGCCAGGTAAACACTCTAAACCCAATACTTCCCCCACCTCTTCGCAACCCAGAGGACAAGCCACCTCCTAGTACCAAGGGCCAGTATGAGCCTGACCGAAGCAAACACTGGACAGAATTTGTAATCATGGAAAACGCACACGATGCCATCTGTATACTCAACAATTCGGCTGCTTTCAACCGCATGAAGGTTGATTATAGTTTTGATCCAGTTCCCAACAGCAATTTATGGCTCTGTAGTGTGTACTTACAGGACGAGCTGGTGGCGCAAGCCAGAGGGACCAAGaagaattcaaaacatgcaGCAGCGGAAGAGGCGGTAAGGAAGTTGAGAATGAATCAGGCTGCTCGCCAACAAGAGCAACAACATCAGCAGAATTTTTCTGCAGGGAACCATACTTCAGACAAGCCCGGTAGTCGCTATGCCCAGCAAAGCAACAAGAATACACAGCTAGGTGAATTGGTCATCCTTGAAAACTCTGATAATGCTATCTGCATAATAAATGACACCGCTCAGTTTAACAAAGTGCTCGCTGACTACAAGTTTACGGTGCTGCCGGACCACCGCTGGCGGTGTGAAGTTTACCTTGATGGTAAGTATGTGGCTGCGGGCATTGGACCCAAAAAGACAGTAAAGCGCAATGCAGCCAAGGAGGCCCTCGCCACACTTCGGCGGACACAAGCTGTCGTGAAGTCCAACCTCAGACAGAAGGGCCACATAAATGCAATTTCCCGAAATCAGATCATGGCTCGTTCTGGTGAGGAATCCATGCGGCAGGAGATCAAGGAGGACAACATTGGTAACCAGCTACTCCGGAAGATGGGCTGGACGGGTGGCGGTTTGGGTAGAGAAGGAGAGGGCATCGCTGAACCCATCAAGGTCAAAGAGCAGTTTACCAGGGAAGGACTGGGTATGGACATGGACAGGCAGAGTAATCTGCTGACTAAGCGTGATATTGAAGAAATCATTCGGAATTATGCGAGCTCTGACCGTCAAGATGACCTGCGCTTCTCCACAGAGCTCAATAATGAAGAGCGTCGGCAGATACACCAAGTATCCCAAAGATACGGGCTGCGCAGCAAATCGTACGGACAGGGCCGAAAGCGCTTCCTCGTGGTTAGCCGCAGAGTTCAGAAGGAGCAGCTGATTGGTCAGCTATTGCAGGAGGGGCAGGTGGGACGATACGAACTGGTGAAACCTCAGGCTTCACAATGACTCGGCTTAACAGGCCTTTGAGAAACCAACAGATGACCATTAATAAATGTGAAGCGGATTTACTTGTCGCTTTCCGAAAAGTGtaaactaatttttaaaaaaaaagcagtcagTGGACTTATGTCTGGAAAATCGGTCCGTTCTCAATGACAACAGTGTGTACCCTTTGCCACTCTTTACCATGTATTTCTGTACAGTTTGTCCAGATTTGCTGTTGGTTAGTTTGAGACCATTTAATAGACACACATTATTAACTAAACATTGTCATATCATGTATCCTGTGAATGATATTTATTGACATGGGTATTAGTGGGGCCTTTTGGCAGCATGTGCTCCTCTCTGAAATGACATTCCATTTTACGTTTTCTCGATGGACAACATATCATTCACTCATCTGTTGTAAAAAcacttgaaatataaaaataacctttaagtaattaaaaaagcagtatatttttttgtcattttctggTTGTTGATTgtagaattaaatatttatctcaACCATAAATCTTTCAACTCCCTGTCTGGCAAATGCCTGAGCAGCAATCCCTGTGAAGTTGTTTGCTAATTGCAAATACTGTCAACCAGTCTGCTTGTAGTGACATTAAATTGAATCTGGTCATTGTC

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149727 lncRNA upstream 195428 20825405 ~ 20836658 (+) False G101229
TU149728 lncRNA upstream 198664 20825405 ~ 20833422 (+) True G101229
TU149699 lncRNA upstream 242632 20789160 ~ 20789454 (+) True G101210
TU149689 lncRNA upstream 250010 20734733 ~ 20782076 (+) True G101200
TU149654 lncRNA upstream 409086 20622623 ~ 20623000 (+) True G101180
TU149768 lncRNA downstream 13090 21048348 ~ 21052432 (+) False G101250
TU149766 lncRNA downstream 13627 21048885 ~ 21052432 (+) True G101250
TU149846 lncRNA downstream 124315 21159573 ~ 21228265 (+) True G101316
TU149852 lncRNA downstream 141788 21177046 ~ 21178830 (+) True G101320
TU149847 lncRNA downstream 191837 21227095 ~ 21239009 (+) False G101316
XM_043257781.1 mRNA upstream 1735 21024552 ~ 21030351 (+) True arr3b
XM_043257780.1 mRNA upstream 1735 21024552 ~ 21030351 (+) False arr3b
XM_043257610.1 mRNA upstream 233110 20795226 ~ 20798976 (+) True f9a
XM_043256934.1 mRNA upstream 409701 20618742 ~ 20622385 (+) True LOC122357533
XM_043257932.1 mRNA upstream 418552 20600810 ~ 20613534 (+) True LOC122358150
XM_043257144.1 mRNA downstream 31989 21067247 ~ 21081163 (+) True lnx2b
XM_043257141.1 mRNA downstream 31989 21067247 ~ 21081163 (+) False lnx2b
XM_043257143.1 mRNA downstream 35073 21070331 ~ 21081163 (+) False lnx2b
XM_043257178.1 mRNA downstream 104699 21139957 ~ 21151490 (+) True tex11
XM_043257417.1 mRNA downstream 204730 21239988 ~ 21241994 (+) True pdzd11
TU149758 other upstream 52687 20930483 ~ 20979399 (+) True G101246
TU149644 other upstream 429951 20600673 ~ 20602135 (+) False LOC122358150
TU149269 other upstream 1681536 19349259 ~ 19350550 (+) True G100926
TU149239 other upstream 1736908 19290370 ~ 19295178 (+) False cxcl14
TU149048 other upstream 2107825 18922498 ~ 18924261 (+) False G100796
TU150017 other downstream 365069 21400327 ~ 21400753 (+) True G101440
XR_006252531.1 other downstream 1247034 22282292 ~ 22309112 (+) False gria2b
XR_006252530.1 other downstream 1247034 22282292 ~ 22307451 (+) False gria2b
unassigned_transcript_1960 other downstream 3016445 24051703 ~ 24051775 (+) True trnav-uac_6
TU150815 other downstream 3051466 24086724 ~ 24089522 (+) True tmem35

Expression Profile