RNA id: XM_043246488.1


Basic Information

Item Value
RNA id XM_043246488.1
length 1788
RNA type mRNA
GC content 0.49
exon number 12
gene id wasb
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11743139 ~ 11747881 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTCTCTTTTGCTGTGTTGCATTTACATCAGATTACAGAACACGGAAGCAACAGTTCCTTTCGAACCATTTGCCTGTTCTAAAAAGATTTCAGGCAGGTACTGTGGGCTAAGCAAGGGCCCCAGGCGTGGAGTCCCAAAATCTGTCCATTACATCAAGGAGAGATGAGCAAAGGAAAAGTCAAGGGGCAGGAGAACGTGCCTAGTTCTCTCCTCAGCAGCCAGGAGAATGAACGCCTGCTAGAGCTGCTGGGAAGGAGATGCGTGaccATGGCCACAGCAGTTGTTCAGTTGTACATGGCTCTTCCTCACAGTCCAACCCAATGGAGTCTCCAACATACAGGAGTTGTGTGTTTCGTTAAGGACAATCCTAAACGTTCATACTACATCCGGCTCTATGACATAAAGgaaAGTAAAATGGTTTGGGAGCAAGAGCTGTATAATCAGATGACATATTGCTGTCCAATGAGGTTCTTCCACACTTTTGCAGCTGATGACTGTCAAGTAGGTTTGAACTTTGCCAGTGAGACAGAAGCTGAATTTTTCAGAAACATCAGTGTGGAAAAGATTCATCAGAGATCCAATCGCCAGGaaaaaaaacagcatgctcCATCTGAAGAAAACCGGGCACTACCACAAATCCCTCCAACAAATGGTCCAGTTTCACAGCCAACTGTAATGGCCACAGTGGACATCCAGAACCCAGATATTGTGGCATCAAGGTACCGTTCCACCCCAGTGCCGACCCCCGCATCAGCCTCACTTTCCATAggcaaaaagaacaaaaagggAAAGAAGAAAGGTCCAAAGCTCACTAAGGCAGACATTGGAGCTCCTAGTGGATTCAAACATGTCACTCATGTTGGGTGGGATCCAAACTCTGGTTTTGATACCAACAATCTTGATCCGGACCTGAAGAAACTGTTCAACAGTGCTGGTATCAGTGATGCTGAGCTGGCAGACAAAGAAACATCTAAGATTATCTATGACTTTATCGAGCAATCTGGAGGCCTGGATGCTGTAAAAGAGGAAATGAGGAAACAGGaAGGTCCTTGTTCTGCTCCTGCACCTCCTCCACCTCGCGGTGGGCGTCCCCCAGTCCCAGGTCCACCCGGACGTCCTGCGCCACCTTCACGCAGCCCCGGACCCCCGCATCGTGGTCCTCCCCCACCTGCACCACCTGGAGGCCGTCCTGGGCCCCCACCCCCTATGCCATCTTGTCTACCACCTCCACCTCCCCCCAGCCACAGTCACAAGCCACCTCCTCCACCTATGGGTTGCGGTGCACCACCTCCACCTCCGCCcccacctcctcctccaccaccaTCTTCTTCAGCCAGTAACTTCCCCAGTAGTCCTGGCAGCTCagcaccacctcctcctccctccGGTGGAGGAGGACGAGGAACCTTACTGGAGGAAATTCGCCGTGGACGTGTGCTAAAGAATgTCTCTGAATCCCCGGACACTAATGCAGCTCCAGCTGAAGATGAATCTTCAGCGGGAATTGTGGGAGCTTTGATGATGGTGATGCAGAAAAGGAGTAAAGTTATTCATTCCTCAgatgaagatgatgacgGGGgcgatgaagatgaagaagatgaaTGGGACGAATAATGCTCTTGGTTTACAAACTTTTGCCATCCACCAATCCATAAAAATGAGCCGATAAAACTGATGCTCACTGGAAATTATTTTAGCAGGCTTGAAACCTATTCCAGATTAAAACTGCACTGAAGATCTTCTGTAAATCCGATTAAATCCAATAAAGCAAAACCCTGTGACAACGA

Function

GO:

id name namespace
GO:2000601 positive regulation of Arp2/3 complex-mediated actin nucleation biological_process
GO:0030595 leukocyte chemotaxis biological_process
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93477 lncRNA downstream 75659 11667166 ~ 11667480 (-) True G63134
TU93470 lncRNA downstream 78365 11663435 ~ 11664774 (-) True G63127
TU93463 lncRNA downstream 91235 11648509 ~ 11651904 (-) True G63120
XR_006251589.1 lncRNA downstream 121934 11620447 ~ 11621205 (-) True LOC122350252
TU93427 lncRNA downstream 178734 11562278 ~ 11564405 (-) False G63095
TU93660 lncRNA upstream 73405 11821284 ~ 11823244 (-) True G63254
TU93661 lncRNA upstream 73405 11821284 ~ 11823244 (-) False G63254
TU93738 lncRNA upstream 107866 11855745 ~ 11856062 (-) True G63304
TU93792 lncRNA upstream 268847 12016726 ~ 12017351 (-) True G63344
TU93795 lncRNA upstream 271832 12019711 ~ 12019953 (-) True G63347
XM_043246525.1 mRNA downstream 59514 11675274 ~ 11683625 (-) True gpr173
XM_043246446.1 mRNA downstream 127868 11579162 ~ 11615271 (-) True nol4la
XM_043246480.1 mRNA downstream 167926 11569548 ~ 11575213 (-) False ptk6a
XM_043246479.1 mRNA downstream 167944 11569548 ~ 11575195 (-) True ptk6a
XM_043246486.1 mRNA downstream 239107 11481644 ~ 11504032 (-) True si:dkey-70p6.1
XM_043246496.1 mRNA upstream 1717 11749596 ~ 11764650 (-) False slc38a5b
XM_043246494.1 mRNA upstream 1717 11749596 ~ 11764650 (-) False slc38a5b
XM_043246495.1 mRNA upstream 1717 11749596 ~ 11760910 (-) True slc38a5b
XM_043246512.1 mRNA upstream 49889 11797768 ~ 11801654 (-) False LOC122350200
XM_043246510.1 mRNA upstream 49889 11797768 ~ 11801653 (-) False LOC122350200
TU93421 other downstream 178734 11562278 ~ 11564405 (-) False G63095
TU93424 other downstream 178734 11562278 ~ 11564405 (-) False G63095
TU93426 other downstream 178734 11562278 ~ 11564405 (-) False G63095
TU93259 other downstream 397281 11323904 ~ 11345858 (-) False LOC122350269
TU93213 other downstream 611932 11097002 ~ 11131207 (-) False LOC122349915
TU93692 other upstream 30392 11778271 ~ 11779251 (-) True G63274
unassigned_transcript_1295 other upstream 49251 11797130 ~ 11797202 (-) True trnaf-gaa_1
TU93842 other upstream 515815 12263694 ~ 12264533 (-) True G63385
XR_006251575.1 other upstream 603367 12351246 ~ 12363095 (-) False kcnq2a
TU94636 other upstream 2061549 13809428 ~ 13863250 (-) True G63933

Expression Profile