RNA id: XM_043246496.1


Basic Information

Item Value
RNA id XM_043246496.1
length 3180
RNA type mRNA
GC content 0.41
exon number 16
gene id slc38a5b
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11749596 ~ 11764650 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTGCCTTACTCCCTTCAATAGAACCACACtgtcctttctctctttctctcttgggCTCTACTTTAAACCTTTAACAACTGGGATAAAAAGCAAAAcctcaacaacaaaaaaagctttcagaGAATGCTTCACCAGCACTACCTTTGAGAAAGCAACAAGAACCATTTAAAAAAGGGTCTACTTTAGAGAAAAGGCTTCACACAATTCTTCACAAATTTCACtgcttaaaaaagaaaaagaaacaatggAACTTCAGAAATTAACAAACGGTCATCACCAAGACTTTCAACATCTCGAGGAAGGAGAGTCACCTGAACGAGAGGAGTTTTTACCACACAAGAGTGATGGAGGAAAACCCCCTCAGTTTACAGATTTTGAAGGAAAGACATCATTTGGAATGTCTGTCTTCAACCTCAGCAATGCCATCATGGGCAGTGGGATTCTGGGACTGTCTTACGCCATGTCCAACACTGGTGTTGTCCTCTTTCCGATCTTGTTGACCTGCATTGCTATCTTGTCATCATACTCCGTCCATCTTCTGTTGAGGAGCGCAGGGGTTGTAGGTATTCGTGCTTATGAACAACTGGGTAAACGAGCATTTGGACACCCTGGAAAAATACTGGCAGCTCTTGTCATAACAATGCATAACATTGGTGctATGTCTAGCTACCTCTTCATTGTGAAGTCTGAATTACCTTTGGTTATTCAGGCTTTCCTTGGCCTTCAGCACAGCAGTGGtGAGTGGTTCCTGAATGGCAACTATTTGATCATCATTGTGTCCATTTTAATCATCTTGCCCCTTGCCCTGATGAGACAACTTGGGTACTTGGGGTACACCAGTGGCTTCTCTCTGACATGCATGGTGTTCTTCCTGATCTCAGTCATCTATAAGAAGTTCAACATCCCTTGTCCTTTTGATGGTTTCACCAACCACACTGCTGAAAACATATCTTTTGATGGCGAATGTGAAGCCAAATACTTCACTATCAACCAGCAGACGGCCTACACGGTTCCCATCTTGGCCTTTGCTTTTGTATGTCACCCTGAGGTGCTGCCGATCTACACAGAGCTGCGCAATCCCACAAAGAGACGCATGCAGGCCATTGCCAACGTGTCCATCCTGGGGATGTTTGTCATGTATCTGCTCACTGCCATCTTTGGCTACCTCACCTTTTATTTAAACACAGAAGCAGAACTTCTACACACCTACAGCAAGGTGGATCCTCTGGACACTCTCATCCTGTGTGTGCGTCTGGCAGTGCTGGTGGCTGTGACTCTGACTGTTCCTGTTGTGCTCTTCCCGATTCGCAGAGCCCTTCTTCAGCTTCTATTCCCTGATAAGCCCTTCCATTGGGTGCGTCACATCTCCATTGCATTGTGTCTCCTTTCTGTAGTCAATGTGCTCGTCATTTGTGTGCCCAACATTCGTGACATTTTCGGCATCATCGGTGCAACCTCTGCTCCGAGTTTGATCTTCATTCTCCCAGGTCTTTTTTACATCCGTATAGTTTCCACCGAACCAATGAACTCAAGACCAAAAATTCAGCCTGCTTCACTGCTCTGGGCTTCATCTTTATGAGCATGAGCTTGACGTTCATCACACTGGATTGGGTCTACGGAGAGAATCGAAGTGGAGGAGGTCACTGATCTTCAACCACAATACTGTAAGGGTCcaaaaagccttcttagaggaACATCACCACCCCTCTCCTGAACTTGAgagaaatcaaaacaacagtTAGGCTGGACCCAACTCACCTCAGATCTGTTTTCCCACTGCGTAAGGAAAGGACTGATGTCCTgccatctttaaaataaaaatggataaagATCCTATGATGTTTCATGGTGGAGGATTTCTGGGTGACACAGAAATGTCATGCCAACTTGAGGCTGTTTCTACAAACGGGCCTTGTAACGATGAATGATGCATGTGTTGGAGATGGAAGTCCGCTAAATAGCTTTAAAATAACGCCAAAAGATACAGCagaaaccaaaataaacaaCTGGAGAGATTTGTTTGAATACCAGGAAACAATCATGTTTGTTACATACCATATGTTCTTTAGTCCTCATTAAATGAAAGCCATAGTTCCAGAGTGCAATACtagagaatgttttttttcattaaaaaatgttgctcATTATAAGAAAATTCAACATCACCTCAGAATGTCTGCAGACCTGAACCAAATAGGTCAGGGTCTGTTATATCCGAAAATGAAATTTGTGAAAttgaccagaaaaaaaaagaaaaacaatatttcagttgAAAATTGGTCCTGAAATATAAACTGGACTACAAGTGAAAACAGACAATCAGCTTTACAccatttcagggttttttttctgttgggatataatatattatgtcaaACAAATGTGAGGTACGTACAGTTGCAGTATTTTGTGGTGCAGTGGGGTGGAATGCCTTTTACTGTGATGGTCAATAACTACAGTTAAGATGCTTAATTACATTGCTGTGATGCATATAATGATGCAAACAAAGCCTAACCGGTGAATTCGGTGATTCATTGATCTATCACAATCTAATAACAGTATACTGTTTTATGAATTGTCCAGTCCATCactaattattttaagtaagtTATATTTTTCCaagaaatgtatgtaaaattgtataggaaaaactattaaataggaaacagaaaaatatttagacCCCACTAAAATTTTTACTCATGAAATAGCACACAATTGCCGAAAAACCTTACACAACAAAATCAACAATGACTTTGCATGTCATTAAATGACATCTTATCCTCCTGGTCTGCTGTAAACTGTGAGACAATGCAACGCTTGAAAGTGATCTCAAAGCACACCCACTCACAGTATCAGATCATTGCTAATACCATTAAAGAACGGCAATCCCCCTCCTCTTCAAGTTCCCACTGTCCTGCAATGCCTATTTATTCTGTCGTAggggaaataaatacattgtttcaATGACTGTGTTTGTTAGTTAATCAAAAAAACAGGTGCCAAAATTGTATGAGGTTAAAGATCGACAGTTCCAATGTGAAACACAAATGCACCAAAGAAAGTTGGCAGTTGAACAAGTGCCTTTTTctactgtttgtttgttggtttacTGAACTGGCCTTTGACTTTGTCATACTTGCCGTTTTCAATAAAGATTGTGTGGTCAGTATTAAAAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93477 lncRNA downstream 82116 11667166 ~ 11667480 (-) True G63134
TU93470 lncRNA downstream 84822 11663435 ~ 11664774 (-) True G63127
TU93463 lncRNA downstream 97692 11648509 ~ 11651904 (-) True G63120
XR_006251589.1 lncRNA downstream 128391 11620447 ~ 11621205 (-) True LOC122350252
TU93427 lncRNA downstream 185191 11562278 ~ 11564405 (-) False G63095
TU93660 lncRNA upstream 56634 11821284 ~ 11823244 (-) True G63254
TU93661 lncRNA upstream 56634 11821284 ~ 11823244 (-) False G63254
TU93738 lncRNA upstream 91095 11855745 ~ 11856062 (-) True G63304
TU93792 lncRNA upstream 252076 12016726 ~ 12017351 (-) True G63344
TU93795 lncRNA upstream 255061 12019711 ~ 12019953 (-) True G63347
XM_043246489.1 mRNA downstream 1715 11743139 ~ 11747881 (-) True wasb
XM_043246488.1 mRNA downstream 1717 11743139 ~ 11747879 (-) False wasb
XM_043246487.1 mRNA downstream 1718 11743139 ~ 11747878 (-) False wasb
XM_043246525.1 mRNA downstream 65971 11675274 ~ 11683625 (-) True gpr173
XM_043246446.1 mRNA downstream 134325 11579162 ~ 11615271 (-) True nol4la
XM_043246512.1 mRNA upstream 33118 11797768 ~ 11801654 (-) False LOC122350200
XM_043246510.1 mRNA upstream 33118 11797768 ~ 11801653 (-) False LOC122350200
XM_043246509.1 mRNA upstream 33118 11797768 ~ 11801377 (-) True LOC122350200
XM_043246461.1 mRNA upstream 63472 11828122 ~ 11837390 (-) False inavaa
XM_043246460.1 mRNA upstream 63472 11828122 ~ 11837390 (-) False inavaa
TU93421 other downstream 185191 11562278 ~ 11564405 (-) False G63095
TU93424 other downstream 185191 11562278 ~ 11564405 (-) False G63095
TU93426 other downstream 185191 11562278 ~ 11564405 (-) False G63095
TU93259 other downstream 403738 11323904 ~ 11345858 (-) False LOC122350269
TU93213 other downstream 618389 11097002 ~ 11131207 (-) False LOC122349915
TU93692 other upstream 13621 11778271 ~ 11779251 (-) True G63274
unassigned_transcript_1295 other upstream 32480 11797130 ~ 11797202 (-) True trnaf-gaa_1
TU93842 other upstream 499044 12263694 ~ 12264533 (-) True G63385
XR_006251575.1 other upstream 586596 12351246 ~ 12363095 (-) False kcnq2a
TU94636 other upstream 2044778 13809428 ~ 13863250 (-) True G63933

Expression Profile