RNA id: XM_043246950.1


Basic Information

Item Value
RNA id XM_043246950.1
length 1910
RNA type mRNA
GC content 0.38
exon number 6
gene id zgc:112962
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10284492 ~ 10291110 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCACCACCCGGAACAGTAGTGGCGCAGTCGTGCTAGGACGTGTGACTTGTCAGATAGGGCAAAATCCGAAATATTATCTATGAATGTTGTCAGCCAGGTCTGTTTTTGAGACTAGAGGGACAGGTTTCAGAGGTCCATATCAAATGCACTACTGCAGAATAACACACTGAAAGAAAGTAGTTCAAATGGCAGACAAAGGCAACAGTGAGGATACGGGACAGCTTTCCTGTCAACCTTCTGACACTATGCAGCAAGGAACTGACCGTAGGTCTAACCCAGGACctaatacaaaagaaaaaaatgagagTATCAGTGAACCTGAGGAGCAACATAAAGGCCCGTCTGGGGATACTTCACCAGATATTAGAGCTAAAAAAAGAGATGAATCCATTCTTAATATCCAAAAGCCTAAAAAAGTAGAAGAAAAGCAAGAAGAAAAGCAAGAAGAAAAGCAAGAAGAAAAGCAAGAAGAAAAGCAAGAAGAAAAGCAAGAAGAAAAGCAAGAAGACAAGCAAGAAGACAAgcaagaagaaaagaaaaaagaaaagaaagaagaagaaaagaaaaaagaaaagaaagaagaagaaaagaaaaaagaaaagaaagaagaagaagaatctgaagaagaagaatatgaagaagaagaagaaaaaggaaaagaagatATGAAAAGGGATATAAATGAAGACCAGGCTCAAGATAGGAACATCCAATCACAGATCACTGCGCCAGGAAATAATAAAACATTTTGGATTTGTGCAGCCGGTGCCATTGTGTTAGCTGTGGTTTGTGCATTAATGTGTAGTCCTGACTCAACTCCACCTGTACAAAACGAGGTAAATGTGGTGGACATATTCAATCAGGAAATGAAAAATCTTAAGAATAGCTTTCCAAATCAGCATGCAGAGCTCTGGAGGAGGAGTCTTATTCATCTTCGGCGCcacctaaaaactaaaaacccCACCGAACCCGTCAGCCTGATTCTGACGTCTGATCACAGAGCTGAAAAGACACTTGGTTGCCTGGCCCAATGTTTGGCCCAAGCCTTTTCTACTGCTCTTAACTCTTCGTTTCTGCATATTAATGGAAAAGATAAAGCATCACAAGACAGTGATCAGGTCAAGCTGGACATTGATAGAGAACTGAAAAAAGcctttgaggaaaaaaagtctGCTGCGGTGGTCCACCGTTTTGAGGAGCTCCCTCCTGGATCCACTCTCATCTTCTACCGTTACTGTGACCACGAGAATGCGGCTTATAAAAACGTCTTCCTGGCCTTTACTGTAATGCTTGATGCAGAAGTGGAAGTGCCATCCGATGTCAATCTAGGAAGAGTTGAGGAGATGGTTCAAGAGCACATAAAACACAAGTTTGTCTCCTCTGACAAGTCAGCAACGTTTAATCAAATGGACGTTGACAAACTAAGTGGACTCTGGAGCAGAATATCACATCTCATCTTGCCAGTGGCTGCAGAAGAGAAGATTGAGCAGCAGGGCTGCGGGGaatataataaagcattttaaagacactttttgcattttgcaaaaaaaatactacttcaAATATTTGActtaagcaaaaaatatatgtatatgggaATTTGTCGCTGTTTGGATGATAGGCCTCAATTTTCTTTGACACTAAACTACCACTTTGGAGATAAtgaattttataaaaacataaaatgaaggaagtttaccatttttatagttcttctttcttttcatgtAGATCTGTTTGCatctaaattatgttttaatttaaaaaagtaattttttttttttgatctgtACATTTGGATTTGGAGGTGAAAgtgttatatttgttatatgaTCGATTTTCTTTTCTACTTCAAAGCTTTATTAGAGAAAATAAACGTGCCTTAATAAATTTATCAGCTCTTCTTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92949 lncRNA downstream 19731 10263818 ~ 10264761 (-) True G62800
TU92943 lncRNA downstream 31236 10250633 ~ 10253256 (-) True G62795
TU92944 lncRNA downstream 32257 10250633 ~ 10252235 (-) False G62795
TU92941 lncRNA downstream 36371 10245196 ~ 10248121 (-) True smim24
TU92937 lncRNA downstream 127299 10156975 ~ 10157193 (-) True G62789
TU92955 lncRNA upstream 10552 10301662 ~ 10301885 (-) True G62805
TU92967 lncRNA upstream 34631 10325741 ~ 10327208 (-) True G62817
TU92973 lncRNA upstream 79223 10370333 ~ 10373331 (-) True G62821
TU92977 lncRNA upstream 90607 10381717 ~ 10443630 (-) False G62824
TU92982 lncRNA upstream 90607 10381717 ~ 10443630 (-) True G62824
XM_043246948.1 mRNA downstream 130 10280303 ~ 10284362 (-) False si:dkeyp-82a1.6
XM_043246947.1 mRNA downstream 130 10280303 ~ 10284362 (-) True si:dkeyp-82a1.6
XM_043247660.1 mRNA downstream 12495 10264841 ~ 10271997 (-) True haus5
XM_043246080.1 mRNA downstream 25300 10257145 ~ 10259192 (-) True LOC122349939
XM_043245989.1 mRNA downstream 27542 10253890 ~ 10256950 (-) True dohh
XM_043247622.1 mRNA upstream 588 10291698 ~ 10297072 (-) True LOC122350862
XM_043246944.1 mRNA upstream 7249 10298359 ~ 10300306 (-) True tmco1
XM_043247452.1 mRNA upstream 25315 10316425 ~ 10320373 (-) True cpt2
XM_043247453.1 mRNA upstream 25315 10316425 ~ 10320371 (-) False cpt2
XM_043247531.1 mRNA upstream 38666 10329776 ~ 10338669 (-) False gls2a
TU92747 other downstream 315007 9961797 ~ 9969485 (-) False mllt1a
TU92748 other downstream 322791 9954750 ~ 9961701 (-) False mllt1a
XR_006251623.1 other downstream 1021666 9257952 ~ 9262826 (-) False mindy4
XR_006251592.1 other downstream 1627206 8652426 ~ 8657286 (-) False pola2
TU92043 other downstream 1634527 8647281 ~ 8649965 (-) True mrps36
TU92903 other upstream 98073 10389183 ~ 10392043 (-) True G62760
TU92984 other upstream 149654 10440764 ~ 10478685 (-) False G62826
unassigned_transcript_1293 other upstream 249109 10540219 ~ 10540291 (-) True trnar-ccg_26
TU93206 other upstream 696336 10987446 ~ 10990704 (-) False cep104
TU93213 other upstream 805892 11097002 ~ 11131207 (-) False LOC122349915

Expression Profile