RNA id: XM_043247215.1


Basic Information

Item Value
RNA id XM_043247215.1
length 1943
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC122350591
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 15578108 ~ 15648322 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCTTTCTCGAGCTGCAGGGAGCCAAATGGCGCACTAATTTAAGAGTTAACGTTAAGACGTCTCCTTTACGTTTTCGTGGATTTTACCGATTTCCTGAAAACTTTCCGCGGGACGAGACGACTCGCGCACGGCGTAGGAAAGGGAGGATCTCCCCTCGCGAGCTCGTGACAGCACCGCCGGGATACAAACTTTCCGAAAACGTCTAGATTGACTCGGCCACTAATTAACAGGGACGGAGTGCCATCACCAGGCGGTGTGTGAGGGGTGCCAGCGGCCGATATCCGACCGCTTTCTGATGCGCGTCAACGAGTCTTCATGGCACGAGGAGTGTTTGCAATGCGCCGTGTGTCAACAACCGCTCACCACCAGCTGCTACTTCCGGGAGAGGAAACTTTACTGCAAACACGACTACCAACAGTTATTTGCGACCAAATGCAGCGGCTGCCTGGAGAAAATCGCCCCCACAGAGTTTGTGATGCGGGCGCTCGAGTGCGTGTACCACCTTAACTGCTTCTGTTGCTGTGTATGTGACCGACAGCTGAGGAAAGGGGATGAGTTCGTCCTGAAGGACGGACAGCTGCTGTGCAAGAACGACTATGAGAGGGAGAAAGACCTCCTGGGCTCTGTCAGCCCCGATGACTCAGATTCAGAGAAAAGCGAAGATGAAGAGTTGGATATCAAGCCGGAAAAGGGTTCAGGAGGAACTGGGAAGGGAGATGATGGGAAAGACCCAAGAAGACCCAAACGACCGCGTACCATCCTTACCACGCAGCAGAGACGTGCGTTCAAGGCATCCTTTGAGGTTTCTTCCAAACCATGCCGGAAGGTAAGAGAGACGCTGGCTGCAGAGACAGGCTTGAGTGTTCGCGTGGTTCAAGTGTGGTTCCAGAACCAAAGAGCTAAGATGAAGAAGTTGGCGCGgagacagcagcagcaacaggaGCAGCAGAACTCCCAAAGGCTGGGCCAAGAGGTGATGTCCAATCGAATGGAGGGAATGATGAACTCCTATACACCATTGGCTCCCGCCCAACAACAGATGGTTGCTATGGAGAACGGTTACAGCACCGACCCTTTCCAGCAGGGCCTCACTCCTCCTCAAATGCCCGGTGACCACATGAACCCATATGGAAACGACTCGATATTCCACGACATTGACAGTGACACTTCATTGACCAGCCTTAGTGACTGCTTCATGGCCTCGTCCGAGGCGGGCTCAATGCAAGCGAGAGTCGGGAACCCCATCGACCGGCTCTATTCCATGCAGAGCTCCTACTTTGCTTCATGAAAACCTAAACAGACAAGAAAAGGCAAAAGTGGGTCACTTCGCTGCAGCTCACTAGTCAGACGCCGCCTATCAAGGAAATACAACAGAATCGTCGACAAAGCTCAAAGACGAAACATCTTAGATAGACAAACAGGCAAAAACAGGAAAGACAAGTGAACTTGAAGACTTACGTCCTTATTTCTCTGCAGTGAAGCTCCAGCTCTGGATGCCCTGAGGCACCTGaggctgactttttttttttttctagatacTTGTAGATTGTTTGTACATGACTTTCTCAGAAGTAGCATTTCATCTTATCCTCATCGACTTAAAAGAGTACTGACTTGAAGCATCAAGCCTCGACTTATGATTTCCTGCCGGGAGAGGCGGAAGATCACGACTCAAAGCTCATAATGCATGAATCCATATCTTTGTGATTGTTAcgttacaaaaaagaaaaaaaccaaaatgaaaaaaaaaaacttgtgttgTTCAGATGTTAAAAATGTGATGTTCGGACtcataatttcttctttttcattatgttcagcattgcatttttatcaCTTTGATAGGTTAGCCCTCTGAAAGACCATGTAGAAAAGCTTAGAGGGGGAGATATGTATAGTGTATCTGCATTCGTAAGtatgttagtgtgtgtgagtgtgtgta

Function

GO:

id name namespace
GO:0061386 closure of optic fissure biological_process
GO:0048752 semicircular canal morphogenesis biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060117 auditory receptor cell development biological_process
GO:0021592 fourth ventricle development biological_process
GO:0032474 otolith morphogenesis biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95187 lncRNA downstream 281887 15295350 ~ 15296221 (-) True G64359
TU95185 lncRNA downstream 285123 15292345 ~ 15292985 (-) True G64357
TU95184 lncRNA downstream 287617 15290269 ~ 15290491 (-) True G64356
TU95183 lncRNA downstream 288916 15288911 ~ 15289192 (-) True G64355
TU95182 lncRNA downstream 292299 15285600 ~ 15285809 (-) True G64354
TU95247 lncRNA upstream 14329 15651636 ~ 15651859 (-) True G64409
XR_006251684.1 lncRNA upstream 130361 15767668 ~ 15781887 (-) False LOC122351100
XR_006251683.1 lncRNA upstream 130361 15767668 ~ 15781887 (-) True LOC122351100
TU95371 lncRNA upstream 425572 16062879 ~ 16063753 (-) True G64476
XR_006251675.1 lncRNA upstream 442055 16079362 ~ 16094560 (-) True LOC122351008
XM_043247394.1 mRNA downstream 68913 15496493 ~ 15509195 (-) True lmx1bb
XM_043247447.1 mRNA downstream 170938 15393349 ~ 15407170 (-) True LOC122350755
XM_043247697.1 mRNA downstream 187357 15307737 ~ 15390751 (-) True ralgps1
XM_043247700.1 mRNA downstream 277385 15297625 ~ 15300723 (-) False zgc:194839
XM_043247217.1 mRNA upstream 15523 15652830 ~ 15700850 (-) True mvb12bb
XM_043247774.1 mRNA upstream 196658 15833965 ~ 15948783 (-) False pbx3b
XM_043247772.1 mRNA upstream 196658 15833965 ~ 15948783 (-) False pbx3b
XM_043247769.1 mRNA upstream 196658 15833965 ~ 15948783 (-) False pbx3b
XM_043247771.1 mRNA upstream 196658 15833965 ~ 15948783 (-) False pbx3b
TU95181 other downstream 293978 15283861 ~ 15284130 (-) True G64353
TU95023 other downstream 796398 14779531 ~ 14781710 (-) True G64228
XR_006251614.1 other downstream 846717 14724208 ~ 14731391 (-) False slc20a1a
TU94636 other downstream 1714858 13809428 ~ 13863250 (-) True G63933
XR_006251575.1 other downstream 3215013 12351246 ~ 12363095 (-) False kcnq2a
XR_006251609.1 other upstream 11919 15649226 ~ 15700896 (-) False mvb12bb
XR_006251608.1 other upstream 19612 15656919 ~ 15700896 (-) False mvb12bb
TU95424 other upstream 770527 16407834 ~ 16409664 (-) False LOC122350093
TU95703 other upstream 1685753 17323060 ~ 17343739 (-) False LOC122350953
TU95705 other upstream 1687737 17325044 ~ 17401228 (-) False LOC122350953

Expression Profile