RNA id: XM_043247402.1



Basic Information


Item Value
RNA id XM_043247402.1
length 780
RNA type mRNA
GC content 0.51
exon number 9
gene id LOC122350717
representative True

Chromosome Information


Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 16763297 ~ 16835560 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ATGACACACAGTTGGACGCGGCTGTCTTTACGGGAATCATCTTTTAACGGAAGAGCGGCGGAAGAGaaacTGAGGAATGAGGTGTTTCCATTACATTTATCGCCTCAGCATGTGGAAGCATACCGGCTGCTAGAGGACAGGAAACACAAACTCTCACCCGAGACCGCCGCCCTCTACCTGCTTCGACAACAGCACAAACTATTGGAGACTGAGATCAGCAGGAAGAGGAAGGAGTGCGAAGTCCTTGAGGAGGAGGTGAAGAAAAAAAGCCAGTCATGTCAAACTCTGGAGAGTGAGCTTCAGCATGTTCTGCAGGAGAAAGCACGTCTGAATCTCCGCTTGTTCAACGATACCCAGAAGGCAGCAAAGTATGAGCAGgTGAAAAGTGAGTATGAACAGCTGCAGGAGGCTCTGTACACTGTGACAGTGGAGAGAGATTGCGCTCTGTTGGAGAGGACTGAGCTCCAAGGCAAACTGGAGAACCTAGAGCAGGTGCTGAAGCATATGCGAGAGGCTGCAGAGAGGAGGCAGCAGCTAGAATTAGAGCATGAACAAGCCTTGGCCGTCCTCAGTGCCAAGCAGCAGGAGATTGACCTTCTGCAGAAGGCTCAGGTTGAGGCTAAGAAGGAACATGAAGGTGCCGTCCATCTGTTAGAGaatcACTTGGACAGCATGCAGgCTAAAGTGAGAGAACTGGAGGAAAAATGCCGGACCATAGGTGAGCAGTTTAACCTGCTGTCGAAGAGTTGGAGAAGTTCAGGTTGCAGGCTGGGAAGTTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU95543 lncRNA downstream 72783 16651558 ~ 16690514 (-) True G64582
TU95565 lncRNA downstream 79494 16683237 ~ 16683803 (-) True G64599
TU95512 lncRNA downstream 101886 16558068 ~ 16661411 (-) True G64556
TU95443 lncRNA downstream 302967 16459957 ~ 16460330 (-) True G64531
XR_006251563.1 lncRNA downstream 353601 16407854 ~ 16409696 (-) True LOC122350093
TU95612 lncRNA upstream 208894 17044454 ~ 17044971 (-) True G64634
TU95610 lncRNA upstream 211328 17046888 ~ 17053322 (-) False LOC122350945
TU95704 lncRNA upstream 484816 17320376 ~ 17320972 (-) False LOC122350953
XR_006251657.1 lncRNA upstream 486916 17322476 ~ 17343705 (-) True LOC122350953
TU95712 lncRNA upstream 523876 17359436 ~ 17361850 (-) False zgc:194007
XM_043247401.1 mRNA downstream 355899 16398576 ~ 16407398 (-) True LOC122350716
XM_043246367.1 mRNA downstream 399353 16353908 ~ 16363944 (-) True setd1bb
XM_043247379.1 mRNA downstream 418803 16313504 ~ 16344494 (-) True LOC122350700
XM_043247395.1 mRNA downstream 570953 16191087 ~ 16192344 (-) True LOC122350711
XM_043248020.1 mRNA downstream 771039 15967534 ~ 15992258 (-) False LOC122351126
XM_043247728.1 mRNA upstream 210907 17046467 ~ 17096795 (-) False LOC122350945
XM_043247729.1 mRNA upstream 210907 17046467 ~ 17096791 (-) True LOC122350945
XM_043247727.1 mRNA upstream 210907 17046467 ~ 17096790 (-) False LOC122350945
XM_043246317.1 mRNA upstream 523825 17359385 ~ 17361850 (-) False zgc:194007
XM_043247412.1 mRNA upstream 620582 17456142 ~ 17464579 (-) True rflna
TU95424 other downstream 353633 16407834 ~ 16409664 (-) False LOC122350093
XR_006251609.1 other downstream 1062401 15649226 ~ 15700896 (-) False mvb12bb
XR_006251608.1 other downstream 1062401 15656919 ~ 15700896 (-) False mvb12bb
TU95181 other downstream 1479167 15283861 ~ 15284130 (-) True G64353
TU95023 other downstream 1981587 14779531 ~ 14781710 (-) True G64228
TU95703 other upstream 487500 17323060 ~ 17343739 (-) False LOC122350953
TU95705 other upstream 489484 17325044 ~ 17401228 (-) False LOC122350953
XR_006251564.1 other upstream 523825 17359385 ~ 17361850 (-) False zgc:194007
XR_006251566.1 other upstream 523825 17359385 ~ 17361850 (-) False zgc:194007
XR_006251565.1 other upstream 523825 17359385 ~ 17361850 (-) True zgc:194007

Expression Profile