RNA id: XR_006251657.1


Basic Information

Item Value
RNA id XR_006251657.1
length 981
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC122350953
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 17320376 ~ 17401228 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gagagaggagagaggagaggagagagaggcttTGGGCATTCCCTCACATTCCACTTGACAGATCTGCGCGGTGAAGCTGCTGCTCCTGTAGTGAGTGGAAGAAACGCATATTCTCCTCAGCGCTCGAGGAGGATTCATCACGAGAGCACAATGCAGGAGGATGGCAAGGTGGTGGATGGCAGTCTTCTGGGTGATGCCAATGGGGTGGAGCCTGGCACGGGTCGACAGAAAGAGAGCGGCAAATGGCAGAGGCCTCGATTCACGCGGAAAGCCCTCATGAGGTGCTGCCTGGTCAAATGGATCATCGCCAGCACCGGACCCAAAGAGCAAGgTGGCATCTGACAGAGACCAAGTCAAAATGATGCTATGATGTTCAGAACGCTCAGCTGGTGCCGTCTAGTGGTTACATGGGGAAACAAACTGGTCTGACGCATTAGCTCGTGTGAATCAGACGCATTTAGTCATGTTACGTGCACAATATTAGAGgacaaaatgcttttatgaatgtttatacatttttaatgaactgattTTCAACCAAGCAGCTGCGATGTGTACATAATAAGTATTTGTCATGATGCTGTattgatttaattgtttttttcgcTCTCGAGATTGCTGAAAGAGCTCAGAGAATAACCCATAAGAGAGCTGAGAGAGACACTGAAACAGTTTGTGGCACCATTAAAAGAAAGTGGTATTCTAGGCAGGATCAGGAAATCAGAGATTGGCTTGCAAATGGGGAAATTAGAGAGGGCTATAGGAAGAGTGAAAGAAGAGACAAAGGATAAGAAGTGTATCAGATTTAAGCTAGTGGCCCTATATATTTACAATGCTTAAACCACgccttaaaaatgtataaatgttaatttatcagattcaatttttattctttaaagctatttaaaatcttaatattgCCTATACTATGTAATGAATGATGAACATTTATGGCTGGGGTTTAAAATTGAGGGTCTGGGG

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95704 lncRNA downstream 1504 17320376 ~ 17320972 (-) False LOC122350953
TU95610 lncRNA downstream 269154 17046888 ~ 17053322 (-) False LOC122350945
TU95612 lncRNA downstream 277505 17044454 ~ 17044971 (-) True G64634
TU95543 lncRNA downstream 631962 16651558 ~ 16690514 (-) True G64582
TU95565 lncRNA downstream 638673 16683237 ~ 16683803 (-) True G64599
TU95712 lncRNA upstream 15731 17359436 ~ 17361850 (-) False zgc:194007
TU95713 lncRNA upstream 15731 17359436 ~ 17361850 (-) False zgc:194007
TU95714 lncRNA upstream 15731 17359436 ~ 17361850 (-) False zgc:194007
XR_006251571.1 lncRNA upstream 18464 17362169 ~ 17365510 (-) False LOC122350118
XR_006251569.1 lncRNA upstream 18464 17362169 ~ 17365504 (-) False LOC122350118
XM_043247728.1 mRNA downstream 225681 17046467 ~ 17096795 (-) False LOC122350945
XM_043247729.1 mRNA downstream 225685 17046467 ~ 17096791 (-) True LOC122350945
XM_043247727.1 mRNA downstream 225686 17046467 ~ 17096790 (-) False LOC122350945
XM_043247402.1 mRNA downstream 486916 16763297 ~ 16835560 (-) True LOC122350717
XM_043247401.1 mRNA downstream 915078 16398576 ~ 16407398 (-) True LOC122350716
XM_043246317.1 mRNA upstream 15680 17359385 ~ 17361850 (-) False zgc:194007
XM_043247412.1 mRNA upstream 112437 17456142 ~ 17464579 (-) True rflna
XM_043246070.1 mRNA upstream 197121 17540826 ~ 17543078 (-) True prnpa
XM_043247723.1 mRNA upstream 208815 17552520 ~ 17567609 (-) True rassf2a
XM_043247724.1 mRNA upstream 208815 17552520 ~ 17563121 (-) False rassf2a
TU95424 other downstream 912812 16407834 ~ 16409664 (-) False LOC122350093
XR_006251609.1 other downstream 1621580 15649226 ~ 15700896 (-) False mvb12bb
XR_006251608.1 other downstream 1621580 15656919 ~ 15700896 (-) False mvb12bb
TU95181 other downstream 2038346 15283861 ~ 15284130 (-) True G64353
TU95023 other downstream 2540766 14779531 ~ 14781710 (-) True G64228
XR_006251564.1 other upstream 15680 17359385 ~ 17361850 (-) False zgc:194007
XR_006251566.1 other upstream 15680 17359385 ~ 17361850 (-) False zgc:194007
XR_006251565.1 other upstream 15680 17359385 ~ 17361850 (-) True zgc:194007
XR_006251590.1 other upstream 763748 18107453 ~ 18112701 (-) False LOC122350290
TU96073 other upstream 811430 18155135 ~ 18157543 (-) True G64967

Expression Profile