RNA id: XM_043247597.1


Basic Information

Item Value
RNA id XM_043247597.1
length 2602
RNA type mRNA
GC content 0.40
exon number 11
gene id armh1
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 9122449 ~ 9127648 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAAACATTGGCGGAAGTGAAGTCTGTGAGATGCTTGAGTCATGTCTAGCAGTAAGGAGCAGGCCTCCATCAGACAGGTGATGTGTTTCCTTCATGAATGGGATCAGGGAGATCTTCAGCTGAGAGCAGTGGGGGTTTTCCTGTCTGCTAACAGCAgTCATCAGTACATGATTGAGTTTCTGGAAGTGGGTGGAGTGCTTACCCTGCTTGAGATTCTAGGACAAGACAAACTCAACGAAGGGCATAAAACCGAGGCTCTTCGCTTGCTCCAGATCATCGCCAACACGGGGCAGAAATATAAAGAGCTTATCTGTGAAAGCTATGGTGTGAAGGCCGTAGCTGAATGTTTGGCCAAATCGGAGACAGAGGGGACTCAGGAGACCGCCGCAGCCCTGCTAGAATCTTTGGCCCATGGAAACCCCAAATACCAGAATCAGGTGTACAAGGGCCTGATCGCCCTGCTGACCTGCACCTCACCAAGAGCACAGCAGCTTGTTATACAGATCCTACGAATAGTTCAGCCCATTGTAAAAACAGCACTTCACAGCATAATAGAACCCTTATTGAATCTGCTGAGGTCCCTGCATCTAGAAGTGCAATATGAAGCTATAGAACTGATAACAGAGCTTATGCAATCAGAGGTTAGACTGGCTCTGCTCAGGGGTCTGGTGGCTTTTCTCAAACCAACTAAAGAAAGAAATCCCAAACACAAGATCCTGGAGGaTCCGGAGGTGGCCAAAATGACTGATTCACTCCCTGTGCTTCTCCAGCAAGCAGCTTCTGCAAAAACCATCAGGATTCTGGCACAGAGAAGTGAAGAGATATCCAAAGAATTGCTCTCTCTCAGAGTGATCCATCACTTACTGTACGCAATGGGGAACCAGGAACATGCAGATTCCCAGAGACAAGCCAGCCTGGCTTTGGAGCATTTTGTGCGCATGTATCCAGTGGTGGAGGATCATGTATGCAGAGCTATGGGCACCAGACTGTTTGAGTCTTTTATGCACAATGCCGATGACCTACATTTGAACATGGATGACATTCAAGCTGACATTTTACGCTCAAATAAAGTGAACGTTTCATGTGGTGAGTTGACAAATCCAGAGAGACATAGCTAGgttgtatgtttttgtctttctttgaaGGACACCACTGCTTGATTGGCTTattgaacattattttatattataatgttattttatattataatccattttcaatttatttttctacAGTGCTTGAGCAACAGAATTCAGATTCTTGAACACAGcttgaaactattttttttcttgttgttgatgccattcttaaataaataaaataataaaagtgattaCAAATAGCAGTCTTCTATGGCCTATTTTAGCGCTGTAGACTAGGCCTAGAGAGCTGAAATCTGGCCAGAAGTTAGAGCTCAAAATTCTGCATGATGATACATTGGGCAACTTTTTAAGCAATTTTGCCAGGCAATATTAACAGTAAACCAGCTCAGACACAGGACCCAAGACTGACCCAAATTATCCACATAGAAATTTGTTACCCATTTCATTTTGACCagcaaaattgctcaaaaattggcccagtgtatcatcagcttTAGAGAAGGTTAAAGGAGGCCAATCAAATTTGGCAGGCCTATTTGGCCCTAGAGGTCTGTGAGAAATCGGGGGTCACTAGGTGTATTTAACGGGTTTTGCACCTATTGCAATCACGTGATGTTTCGCGCTTATGCACAATGTTCATATCATGTAATAAATCTCCTCATTCTGAACAACTCAAAAACAACTTCTGTAAAACAAATAGTTCATTATtcaagattatttaaaaaacttacTTTTGCAAACTACTCCTAGGTTTTTTACTCAACCTCGGCAATACCACTGCGGTGCATTTCTTTGGCCTCTCTAAGAGAAAGAAACATGCACAGTGCCAAAGTTTACTCTATTCTTCGCCTCGTTCAGCAgctatttatttgcatttatttcagattCAGATTAAGATATGTTTGACACAAtagattaacatttaaaaagtaatctaaaaatgGCCTTTATGATGCTCTTTCAAAGAAACTTTGCTCCTCTTCATAGAATGGAGATTATGTAATGATTAAAAAGCAGTGTGGAAATACTCAAATGTAACCCAGATGTTTTAGCTTCTGTGtccaacaaatcatttttttcttgagaTGGTGTATTACAGAATTACCTTAGGGCCACCCTCCCAGACTGTTTTAGATGTCTCTAATTCAGACATTAACAAGCTAAATCAGATTCCTGATGAGATAATGAAGAGATGATTGAGTCATTCATGATGAACACTTGCTGTTAACtacatcatataaataaaagcaataaaaatgaataaaaatgtcaattgaAAAGTGCTATCAAGCAGCCACAGTCTGCATATTCAGCTGCCTAAAGATGCTTTGGTGGATACATGACCTTACAGTCCACacaagttttaaatattgtagTATATAAAGTGTATTACTAGGTTAAGGGGGAGCAGCTCTGAGCAGAAGATCCACAGGCTGTATGTAGAAAGCTGGTCAGAGTAAAACTGTAGAATTGTAGTCAGAATTCTAAGAGTGATGTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92265 lncRNA downstream 37255 9082795 ~ 9085194 (-) True G62293
TU92203 lncRNA downstream 83749 9030865 ~ 9038700 (-) True G62250
TU92206 lncRNA downstream 83985 9030865 ~ 9038464 (-) False G62250
TU92223 lncRNA downstream 115344 9006834 ~ 9007105 (-) True G62263
TU92222 lncRNA downstream 115670 9006555 ~ 9006779 (-) True G62262
TU92550 lncRNA upstream 280774 9408414 ~ 9414439 (-) True G62519
TU92551 lncRNA upstream 280774 9408414 ~ 9414439 (-) False G62519
TU92557 lncRNA upstream 398987 9526627 ~ 9526966 (-) True G62525
TU92615 lncRNA upstream 575319 9702959 ~ 9703191 (-) True G62564
TU92616 lncRNA upstream 575736 9703376 ~ 9703598 (-) True G62565
XM_043247903.1 mRNA downstream 669 9116620 ~ 9121780 (-) True mutyh
XM_043247904.1 mRNA downstream 673 9116649 ~ 9121776 (-) False mutyh
XM_043247906.1 mRNA downstream 6071 9113487 ~ 9116378 (-) False elovl8b
XM_043247905.1 mRNA downstream 6071 9113489 ~ 9116378 (-) True elovl8b
XM_043247367.1 mRNA downstream 9099 9110391 ~ 9113350 (-) True rps8b
XM_043247677.1 mRNA upstream 233 9127873 ~ 9131091 (-) True guk1b
XM_043246324.1 mRNA upstream 6856 9134496 ~ 9164096 (-) False rnf220b
XM_043246323.1 mRNA upstream 6856 9134496 ~ 9164096 (-) True rnf220b
XM_043248002.1 mRNA upstream 56390 9184030 ~ 9189916 (-) True dmap1
XM_043247073.1 mRNA upstream 62421 9190061 ~ 9230102 (-) True obscna
XR_006251592.1 other downstream 465163 8652426 ~ 8657286 (-) False pola2
TU92042 other downstream 472484 8647281 ~ 8649965 (-) False mrps36
TU92043 other downstream 472484 8647281 ~ 8649965 (-) True mrps36
XR_006251693.1 other downstream 692675 8429694 ~ 8429774 (-) True LOC122351130
XR_006251694.1 other downstream 692905 8429474 ~ 8429544 (-) True LOC122351131
XR_006251623.1 other upstream 130312 9257952 ~ 9262826 (-) False mindy4
TU92748 other upstream 827110 9954750 ~ 9961701 (-) False mllt1a
TU92747 other upstream 834157 9961797 ~ 9969485 (-) False mllt1a
TU92903 other upstream 1261543 10389183 ~ 10392043 (-) True G62760
TU92984 other upstream 1313124 10440764 ~ 10478685 (-) False G62826

Expression Profile