RNA id: XM_043248019.1


Basic Information

Item Value
RNA id XM_043248019.1
length 2531
RNA type mRNA
GC content 0.48
exon number 9
gene id LOC122351126
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 15967500 ~ 15992258 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGAGGCGACCGTACTACGGTGTAAGGAAGCGAGGGGGCCCGTGCAATTCATTATTAGTTTGAATCAGACAATATAAAACTCCgaccttttgtttgttttattgggAATGGTTATAATGTAACGGCATCTCAATGCACTGGCGCGCTTTTAAATGAGGCACGCGTAAAGTGGAGACTTAAACGCTGTTGATTTGATGTTCTGGTCTCATCATTATCATCACCAGCAGTATCATTAGTAGCTAACTGGCATTTTGTTTTCGGGGGCTTCGGCGAGAAGTGACAAGAATCTAAGACCCCTCCTCTGCAGGGCGGAGCGTGCATTTTGATGTCgattttgtatctttttttcttctctgacaCGTCCGCACTGAGTGAATGGCATTGGCACATTGTCAATCGCTCACTACCGCTGCCATCAAACAACATAAAGCACACACAGCCCGCGCGCTCGACTCATAAATTTCCGCCAGCAGATATTTTTGCGCATCGCTTTATGGCGCGTGATTAATTTTTTCGCCAGTTTTTCTATTTTCCCTACTGAAAGtgagaaaactttttttatacgtttttatatttttcctacAATCTTTATAGCTCTGGTCGCCGGTGCTGatggtttaatttatttcactcggcttcttttattttcttatattttatttttgggagaATCTTTTCGGaggcaatatttatttttatttttcctgccTGTTGTTCACGCTAAACGCGcttgtttttaattgcataatcgttaattttgattaattgttaCTTTCCATCAGAGGCATGGGATGTTTTGCTTGCAACTCTTTGTAATACCACGGATTTGTCCAAGTTTTCCAGAAGTGCACAAGGCGAAATTATCCTAAGAAGACCGCGAATAAGAATTCCAGACATCTGCAAAGGACCCCGGCtcttcaaagaaaaaagacaaattggCATGAAGATTCGGACAGGATTGAACGGGCAACCGCTGTCACCTGAACGCTGAAGTTTACTTAAATAATAGGCACGAAAAAGCATCGCTAATTTTTCTCCGATGGACATTCATACAGGAGGATCAAAGACGATTTAAACCTTTTCCATAAAGTGATTCCTGGGACATCAATTCCACTATATTTCACCCAGCGATTTATCGTATTTGCTGCGTTGCTTCGCGGTCAATATTTTGCGCACGATAGCGACCCGTTAACCACCGCACATGAAATAATCAAGttgtttttgcatgtgcatTATCCGACTTTATTTCACCCATCTCAGTGACTGAGCACGAGCGCATCGATTGTGTTGCGGCGGACTATGGACGAGCAAGCCCGGATCATGCAGGCTCTCGGCGGTGTCAGCCTGGCCGGTCACTCGGTGCAGGGAGGCATGGCTCTGCCGCCTCCACATGGACACGACGGAACCGATGGGGATGGAAGAAAACAAGACATCGGTGACATTCTGCATCAGATCATGACCATCACCGACCAAAGCCTGGACGAGGCGCAAGCAAAGCACAGGAAACATGGGCTCAACTGTCACAGAATGAAGCCAGCCCTCTTCAGTGTCCTCTGCGAGATCAAAGAGAAAACAGGTCTAAGTATCCGCGGGGCTCAGGAGGAGGATCCGCCGGATCCACAGCTGATGCGTCTTGACAACATGCTTCTGGCAGAGGGCGTGTCGGGACCGGAGAAGGGCGGAGGAtcagcggcggcggcggcggcggcagcaGCAGCCGGCAGTCCCACTGACAACTCCATCGAGCACTCTGACTACAGGGCCAAACTCTCCCAGATCAGACAGATCTACCATACCGAGCTGGAGAAATATGAGCAGGCATGTAACGAGTTCACTACCCACGTCATGAATCTGTTGAGGGAGCAGTCTCGCACACGGCCCATCTCGCCCAAAGAGATCGAGCGCATGGTCAGCATCATCCATCGCAAATTCAGCTCCATCCAAATGCAACTTAAACAGAGCACCTGTGAGGCCGTCATGATCTTGAGGTCCCGCTTCCTCGATGCCAGACGGAAACGGCGGAACTTCAGCAAGCAGGCGACCGAGATCCTGAATGAGTATTTTTACTCGCATCTTAGTAACCCTTACCCCAGTGAAGAGGCCAAAGAGGAGCTGGCTAAGAAGTGCAGCATAACAGTATCCCAGGGGGTGGGAACCACCATCACAGTGGCACAGGTATCCAACTGGTTCGGCAACAAGAGGATCcgctacaaaaaaaacattggcaaGTTCCAAGAGGAAGCCAACCTGTATGCCGCTAAGACAGCCGTGACTGCCGCGCACGCAGCAGCTGCCGCCGTCCAGAATAGTCAGACCAACTCACCCACCACACCCAACTCCGGATTCCAGATGAAAGATGAAGAATTTCAGCTGGACTCTGCAGAGAACAAAAACACTCTATTAACCAACATGTTCACTGGTGGATACCCTGCGCCATGTTATCAGTCAGACGGCAGGATACAATGATGCCCTGGGGGGGAATCCCATGTATAGTCCACATGGCTTGAATGTAAGTACAGTCTCAGTCAGCC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251684.1 lncRNA downstream 185647 15767668 ~ 15781887 (-) False LOC122351100
XR_006251683.1 lncRNA downstream 185647 15767668 ~ 15781887 (-) True LOC122351100
TU95247 lncRNA downstream 315675 15651636 ~ 15651859 (-) True G64409
TU95187 lncRNA downstream 671313 15295350 ~ 15296221 (-) True G64359
TU95185 lncRNA downstream 674549 15292345 ~ 15292985 (-) True G64357
TU95371 lncRNA upstream 70621 16062879 ~ 16063753 (-) True G64476
XR_006251675.1 lncRNA upstream 87104 16079362 ~ 16094560 (-) True LOC122351008
TU95376 lncRNA upstream 139353 16131611 ~ 16132812 (-) True G64481
XR_006251654.1 lncRNA upstream 269279 16261537 ~ 16283392 (-) True LOC122350933
TU95397 lncRNA upstream 381063 16373321 ~ 16376597 (-) True G64502
XM_043247767.1 mRNA downstream 18751 15833965 ~ 15948783 (-) False pbx3b
XM_043247395.1 mRNA upstream 198829 16191087 ~ 16192344 (-) True LOC122350711
XM_043247379.1 mRNA upstream 321246 16313504 ~ 16344494 (-) True LOC122350700
XM_043246367.1 mRNA upstream 361650 16353908 ~ 16363944 (-) True setd1bb
XM_043247401.1 mRNA upstream 406318 16398576 ~ 16407398 (-) True LOC122350716
XM_043247402.1 mRNA upstream 771039 16763297 ~ 16835560 (-) True LOC122350717
XR_006251609.1 other downstream 266638 15649226 ~ 15700896 (-) False mvb12bb
XR_006251608.1 other downstream 266638 15656919 ~ 15700896 (-) False mvb12bb
TU95181 other downstream 683404 15283861 ~ 15284130 (-) True G64353
TU95023 other downstream 1185824 14779531 ~ 14781710 (-) True G64228
XR_006251614.1 other downstream 1236143 14724208 ~ 14731391 (-) False slc20a1a
TU95424 other upstream 415576 16407834 ~ 16409664 (-) False LOC122350093
TU95703 other upstream 1330802 17323060 ~ 17343739 (-) False LOC122350953
TU95705 other upstream 1332786 17325044 ~ 17401228 (-) False LOC122350953
XR_006251564.1 other upstream 1367127 17359385 ~ 17361850 (-) False zgc:194007
XR_006251566.1 other upstream 1367127 17359385 ~ 17361850 (-) False zgc:194007