RNA id: TU93219


Basic Information

Item Value
RNA id TU93219
length 269
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G81918
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 6881956 ~ 6882224 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTCGGTGAAGTGGAGCAGTGCTATTGCTGAATGGCACGGATTGCACTACGGACTATTGTACCTTTTATAATTTTTTTTTTTTTTAACTGTATTTTATTTTTTTATAATGAACAAGCTGCGTTGTCACGTTTAAAGTGCTTTGTTGTGTGTGCGTGAGGCGCGGGCGCGATCAAACAGCTGTTTTTGCAGGGGACTTGCCTCATCGTCATGGCAACGGTTCGTGGCCAGGTCAGATTAGGTCAGATTAGTTTGTTGCCGTTTGTTGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93200 lncRNA upstream 18535 6863202 ~ 6863421 (+) True G81904
TU93156 lncRNA upstream 194827 6683582 ~ 6687129 (+) True G81870
TU93147 lncRNA upstream 211326 6666733 ~ 6670630 (+) True G81862
TU93150 lncRNA upstream 227686 6653940 ~ 6654270 (+) True G81864
TU93127 lncRNA upstream 237038 6615518 ~ 6644918 (+) True G81843
TU93221 lncRNA downstream 5269 6887493 ~ 6887821 (+) True G81920
TU93179 lncRNA downstream 22832 6905056 ~ 6905344 (+) True G81883
TU93246 lncRNA downstream 105669 6987893 ~ 7085501 (+) True G81939
TU93302 lncRNA downstream 308725 7190949 ~ 7192986 (+) True G81985
TU93335 lncRNA downstream 384870 7267094 ~ 7267316 (+) True G82010
CI01000013_06850663_06853811.mRNA mRNA upstream 26955 6850663 ~ 6855001 (+) True CI01000013_06850663_06853811
CI01000013_06817434_06826090.mRNA mRNA upstream 55866 6817434 ~ 6826090 (+) True CI01000013_06817434_06826090
CI01000013_06795895_06815354.mRNA mRNA upstream 65759 6795895 ~ 6816197 (+) True CI01000013_06795895_06815354
CI01000013_06765502_06790599.mRNA mRNA upstream 91033 6765502 ~ 6790923 (+) True CI01000013_06765502_06790599
CI01000013_06761450_06763720.mRNA mRNA upstream 117693 6761037 ~ 6764263 (+) True CI01000013_06761450_06763720
CI01000013_06915872_06917002.mRNA mRNA downstream 33289 6915513 ~ 6918255 (+) True CI01000013_06915872_06917002
CI01000013_06941851_07005817.mRNA mRNA downstream 59627 6941851 ~ 7005817 (+) True CI01000013_06941851_07005817
CI01000013_07012984_07019146.mRNA mRNA downstream 130499 7012723 ~ 7019146 (+) True CI01000013_07012984_07019146
CI01000013_07023379_07027997.mRNA mRNA downstream 140870 7023094 ~ 7028441 (+) True CI01000013_07023379_07027997
CI01000013_07036369_07042930.mRNA mRNA downstream 153187 7035411 ~ 7043035 (+) True CI01000013_07036369_07042930
TU92936 other upstream 799589 6079666 ~ 6082367 (+) True G81666
TU92951 other upstream 822460 6056662 ~ 6056782 (+) True G81681
TU92027 other upstream 2045724 4835078 ~ 4836232 (+) True G80845
TU91262 other upstream 2816127 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU91155 other upstream 3297172 3584008 ~ 3584784 (+) True G80062
TU93312 other downstream 453721 7335945 ~ 7338239 (+) True G81994
TU93521 other downstream 1146114 8028338 ~ 8041343 (+) True G82168
TU93966 other downstream 2447105 9329329 ~ 9334948 (+) True G82581
TU95556 other downstream 2719387 9601611 ~ 9602235 (+) False G84005
TU95558 other downstream 2719387 9601611 ~ 9602184 (+) False G84005

Expression Profile