RNA id: TU93179


Basic Information

Item Value
RNA id TU93179
length 289
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G81883
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 6905056 ~ 6905344 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGACTGTTCTTGAATGGCCCAGCCAGAGCCCTGACTTAAACCCAATTGAGCATCTCTGGAGAGACCTAAAAATGGCTGTCCACCAACGTTTACCATCCAAGCTGACAGAACTGGAGAGGATCTGCAAGGAGGAATGGCAGAGAATCCCCAAATCCAGGTGTGAAAAACTTGTTGCATCTTTCCCAAAAAGACTCATGGCTGTATTAGATCAAAAGGGTGCTTCTACTAAATACTGAGCAAAGGGTCTGAATACTTAGGACCATGTGATATTTCAGTTTTTCTTTTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93221 lncRNA upstream 17235 6887493 ~ 6887821 (+) True G81920
TU93219 lncRNA upstream 22832 6881956 ~ 6882224 (+) True G81918
TU93200 lncRNA upstream 41635 6863202 ~ 6863421 (+) True G81904
TU93156 lncRNA upstream 217927 6683582 ~ 6687129 (+) True G81870
TU93147 lncRNA upstream 234426 6666733 ~ 6670630 (+) True G81862
TU93246 lncRNA downstream 82549 6987893 ~ 7085501 (+) True G81939
TU93302 lncRNA downstream 285605 7190949 ~ 7192986 (+) True G81985
TU93335 lncRNA downstream 361750 7267094 ~ 7267316 (+) True G82010
TU93338 lncRNA downstream 364273 7269617 ~ 7269836 (+) True G82013
TU93342 lncRNA downstream 370333 7275677 ~ 7275887 (+) True G82017
CI01000013_06850663_06853811.mRNA mRNA upstream 50055 6850663 ~ 6855001 (+) True CI01000013_06850663_06853811
CI01000013_06817434_06826090.mRNA mRNA upstream 78966 6817434 ~ 6826090 (+) True CI01000013_06817434_06826090
CI01000013_06795895_06815354.mRNA mRNA upstream 88859 6795895 ~ 6816197 (+) True CI01000013_06795895_06815354
CI01000013_06765502_06790599.mRNA mRNA upstream 114133 6765502 ~ 6790923 (+) True CI01000013_06765502_06790599
CI01000013_06761450_06763720.mRNA mRNA upstream 140793 6761037 ~ 6764263 (+) True CI01000013_06761450_06763720
CI01000013_06915872_06917002.mRNA mRNA downstream 10169 6915513 ~ 6918255 (+) True CI01000013_06915872_06917002
CI01000013_06941851_07005817.mRNA mRNA downstream 36507 6941851 ~ 7005817 (+) True CI01000013_06941851_07005817
CI01000013_07012984_07019146.mRNA mRNA downstream 107379 7012723 ~ 7019146 (+) True CI01000013_07012984_07019146
CI01000013_07023379_07027997.mRNA mRNA downstream 117750 7023094 ~ 7028441 (+) True CI01000013_07023379_07027997
CI01000013_07036369_07042930.mRNA mRNA downstream 130067 7035411 ~ 7043035 (+) True CI01000013_07036369_07042930
TU92936 other upstream 822689 6079666 ~ 6082367 (+) True G81666
TU92951 other upstream 845560 6056662 ~ 6056782 (+) True G81681
TU92027 other upstream 2068824 4835078 ~ 4836232 (+) True G80845
TU91262 other upstream 2839227 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU91155 other upstream 3320272 3584008 ~ 3584784 (+) True G80062
TU93312 other downstream 430601 7335945 ~ 7338239 (+) True G81994
TU93521 other downstream 1122994 8028338 ~ 8041343 (+) True G82168
TU93966 other downstream 2423985 9329329 ~ 9334948 (+) True G82581
TU95556 other downstream 2696267 9601611 ~ 9602235 (+) False G84005
TU95558 other downstream 2696267 9601611 ~ 9602184 (+) False G84005

Expression Profile