RNA id: CI01000048_01482623_01492925.mRNA


Basic Information

Item Value
RNA id CI01000048_01482623_01492925.mRNA
length 3858
RNA type mRNA
GC content 0.32
exon number 6
gene id CI01000048_01482623_01492925
representative True

Chromosome Information

Item Value
chromosome id CI01000048
NCBI id null
chromosome length 1528931
location 1479739 ~ 1493233 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATAAATACAGTACAGTCTTTATAAGGTAAATAATGAGAATCAAAAATGTTTGGAAATATTAAAGTAATGAGAATTTGGGGCAAAAATATGTTTAATTGTGTTGTAAATAATGTCACAAAACTGCTCCTAAAAATAAGCTTTCTTTATGCAAAAGATCACGTCTTGTTTGTGCCTTTTGGACATGTTTTCCTGACACACACCCATTAGTAGCAATAAGTCATTTTGCTCTTTACACAAACTCAATAAGGCAACAGTGCACATAAACTGTGTGAATCCCGTCAGACGCACATTTCATCATCTGTGTGTGATTGTCACAACTGAGAATGTGTTTTTGACACTACATGTATGTCGCTCCGCCGCGCTACAAACTAAAAATACAGATGAGTGAAGGAGAGCAGCGAGCGTGGCTTCAGCCTCCGTGGTTTGACAGGCACAGAAGCATCAGCGTAGATCAGACCGAATCGCTCTCCTGAAGCTACGAACGGCAGTTTGATCTCTTCACCGCCAACAGCACAGGTAGATCAAGGTCCGGCGGAGAGACGCCTTATAAAGGGATAAACAAAATCCTTTATCACAATCCAAGCAGCTCTCTCAAGTGCTTCAACATGTCCTTTACTGTATGCGAGCTGGGAAACTAGTTTGTTAGAGGAATCAGACACATACGAGGTGAAGAAACGTGACCTCAGTCTCTTCTGCTTTCCAAAGCTGCATTTATTTGATCAAAAATACAGTAAAAACAGTGAAATATTATTCCAATGTAAATCAGCTGTTTTCTATGTGAATATATAGTAAAGTGTAATTTATTCCTGTGATCAAAGCTGAATTTTCAGCATCATTACTCCAGTCTTCAGTGTCACATGATCCTTCAGAAATCATTCTGATATGATGATTTGAAACATTTATGATTATTATCAGTGTTGAAAAAAACATTATAAAAATGTTTATTTATGAATATCTTTTGAAAGCATGGCCTTTCAGTCATATTTCTAGATGAATTACATTTTTACATTTTTAAAAGCCAAAATAAATGCCCATGATGCAAGATGATGATGTCTTCAACATTTTTGGTCCATTAGGATAATAATGATGCAAACACCATTCCATCAAATCCTGCAGCTTTAAATCCATATTTACAGCTGCAAATGGAAAGCATGAATCCACATTAGGCATGTTCTGGATAACCCCAGTAATTATCCTGAGCTTAAAGCAATGAGATTCGCTCTCGCTGGGAGTCATTAAGCAGCTCAAGTCTTTGCTTTGGTTTCCTGACACTTATTAGTTGAGAATCCCTGTTAAAGTGAGCCGGAGTTTCCATTGGCTGATTATGTGCTTCAATAATTCGACGCCTGATGTTTGCTCGGGTTTCATTTTCACTTTTGGTGTCAATTCTCCACTCTCAATAGAACGTGAAATGGATTCTCTATTTACCGCTACACACTAATAGAACTTTATCATAATCAAATCTGGGAGGAATTGTGGAGAATAATGCGACTCGCGGATTTCCGTACGGACTTCTGTATGGAATACATATCAGAATCTGAGCATTTCTGCAAATCACAAAGCCAGGGAACAAACACCTTATATCAAGTTATTTTCCATTTGAAAAGCAGCGTGAATGGGTTTTTTTATTATTATTGTTATGATTTCACACAGCTTGAGGAGAAAATAAAAAGTTTCCAATGGAAACCTGTTCTATTCTTAAAAGTACAGTTCGTCTTAAAGGAATAGCTCATCCCAAAAATTAATTTATATATTTTTAAATTATATATATATATATATATATATATATATATATATATAATTTATATTTTATATCATTTATATTATTTTGTATTATTATTTTTTATAATTTATTATTTGATATATTTTATTTTTTATTATTATATATTTATCTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTTATTTTATTTTGTGTTTATTTCTTTTTTACTATTATTTATTTTTATTAATTTTATATTTATATTATTATTTTTTATTATATAATTAGTTATTATTTTATATAATTCACATAATTTATATTTTATATCATTTATATTATTAATTAATATTATTATTTGATATTTATATAATTATTATTTTTATTTATGTTATTTTTGTTATTTTTACTATTATTTATATTGTTTATTATTATTTTTTTTTTTTATTTATATTTTTATATTACTTATATTATTATTTATTATTTTATTTTTAAGTATCATTATTTACTCATTTACTCACTCTCATATTGTTTTAAATCTTTTTTTTCCCCTGTTCTACAGAAAACATCACTTGGATTTGCAGTAAATGATGAATTCGCTTTATTCCTCTCAAATCATATGCTCAACCATCTCAGTCATCCATTATTGTTGAATGTCAGTGTTCCGTCTACAACTGGACCAGAATCCACACGTTCATCGCCAGTGGATCCCGTCCTGGCAGAGCGAGGTCTCTTTCAATGGAGGAGCATCTCGCTCGGATTGGGGAACAATTACAGCTTTATACACGGAGAAACATAATCTGTGAGAGCGTCGATACCAGAAACCCATCAAGGCCCTGACAAAACCCCTAATGAACTTGTTCGGGAAAAATCTGGGCTGCAATCTCAGCGACGCTGAGCAACTCCAGCCGGAGAATGACGACGGAGAAGGCCGACGGGAAAGGGACGGGGACTCGCGGCATCCGTCTGTCTCGCTCGCTGATATCCCGTGCCGAGAGGAAGAGAGACGGTTGAGTTTTCTTAACCAGCTTACGTCGGAAGCAGGAGCTGACAAAGGGAAACGGCGGAGAGGATCACAGTCCACAGTGATTTCTGCAGAATTTTCTAGGCTTTTTAAGGCTTCAGGTCGAGACCTTCTGTTTTCCAGCTCTTCTAACCTCGGTTCGGCTCTCCTCCTCTCGCTCGGCTCAGCTGCAGTCAATGTGTCATTGTGTGTGTTCAGAAGGACCCGACAGACACTTTGGTGGTCTCGGTCACTGTCTACACCGCTGCTGCAGTCGTCCGCGGATTACGCTATTGTGCGTTGTGAAAAGCACACTCTGGCAGAGATTGCCTCGATACGGCACAGAGACAGAACGACGCATGCAAACTTCACCGTGTGTTTACAGAGAAGAGCAGCTGTACAGATGACTGAGGCCATCAGCTCCAACAGCACCACATCAGAAATCTCCTGCAAGTCTCAACTAACATTAAAAAAGCAGCAAATGGAGACTTTTGTGTCTCAGATTGGTCTCTGAGCTGAGCAGTGTTATTTTAGTAATATACTGAGATACTATTATAGTTTTATAAAATATTTAATTTCAGTTTTAGTTATTTTAGTACATCAAAACTAAATGAAAATGAGAAATGATGACTAGGTGACTAGCTGAAATAATATAAGTTTTTTTATATTTTATTTTATTTCAAGCATCAAAAATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGATTTTAGTTTTAGTGAAATATAATAACACTCTGAGCCTAAAATAAGTATAAACAAGCATAAACAACATGATCTGAATGGAAATACTGTGTAGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232708 lncRNA upstream 117344 1356997 ~ 1362395 (+) True G205000
TU232673 lncRNA upstream 131984 1274768 ~ 1347755 (+) True G204970
TU232664 lncRNA upstream 210808 1268511 ~ 1268931 (+) True G204965
TU232665 lncRNA upstream 224745 1247643 ~ 1254994 (+) True G204966
TU232606 lncRNA upstream 362155 1115565 ~ 1117584 (+) True G204917
TU233010 lncRNA downstream 9164 1502397 ~ 1502714 (+) True G205260
CI01000048_01374716_01392617.mRNA mRNA upstream 87122 1374716 ~ 1392617 (+) True CI01000048_01374716_01392617
CI01000048_01357896_01360700.mRNA mRNA upstream 118995 1357112 ~ 1360744 (+) True CI01000048_01357896_01360700
CI01000048_01322005_01325973.mRNA mRNA upstream 153609 1322005 ~ 1326130 (+) True CI01000048_01322005_01325973
CI01000048_01299946_01304448.mRNA mRNA upstream 174853 1299556 ~ 1304886 (+) True CI01000048_01299946_01304448
CI01000048_01224995_01226178.mRNA mRNA upstream 253561 1224857 ~ 1226178 (+) True CI01000048_01224995_01226178
TU232734 other upstream 96041 1382955 ~ 1383698 (+) True G205026
TU232648 other upstream 263932 1214372 ~ 1215807 (+) True CI01000048_01214358_01215546
TU232496 other upstream 485770 993455 ~ 993969 (+) False G204824
TU232180 other upstream 817883 660719 ~ 661856 (+) False CI01000048_00659494_00667971
TU232089 other upstream 1118078 361025 ~ 361661 (+) True G204472

Expression Profile