RNA id: TU232664


Basic Information

Item Value
RNA id TU232664
length 421
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G204965
representative True

Chromosome Information

Item Value
chromosome id CI01000048
NCBI id null
chromosome length 1528931
location 1268511 ~ 1268931 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTGTTCAAGGAATAGAAAAGCATTATAATGTATTATAACTGTAGTTAAGAGATCAAGATCATACAATGCATTATAATTAATGCATTCAAAATGCATTTTATAGTATAAAGGCTGTAATGTACAACATTGTCAGCATTTACCGAGTCTTGTGGATTAGTTCAGTTCAGAATTAAAATATCCTGATAATTTACTCACCTCCATGTCATCCAAGATGTTCATGTCTTTCTTTCTTCAGTGGAAAAGAAATGAAGGTTTTTGAGGAAAACATTCCAGGATTTTTCTCCATATAGTGGACTTCACTGGGGTTCAACGGGTTGAAGGTCCAAATGTCAGTTTCAGTGCAGCTTCAAAGAGCTCTACATGATCCCAGACGAGGAATAAGAGTCTTATCTAGAGAAACCATCGGACATTTTCTAAAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232665 lncRNA upstream 13517 1247643 ~ 1254994 (+) True G204966
TU232606 lncRNA upstream 150927 1115565 ~ 1117584 (+) True G204917
TU232571 lncRNA upstream 190812 1077400 ~ 1077699 (+) True G204888
TU232533 lncRNA upstream 242994 1025136 ~ 1025517 (+) True G204855
TU232519 lncRNA upstream 254540 1013763 ~ 1013971 (+) True G204843
TU232673 lncRNA downstream 5837 1274768 ~ 1347755 (+) True G204970
TU232708 lncRNA downstream 88066 1356997 ~ 1362395 (+) True G205000
TU233010 lncRNA downstream 233466 1502397 ~ 1502714 (+) True G205260
CI01000048_01224995_01226178.mRNA mRNA upstream 42333 1224857 ~ 1226178 (+) True CI01000048_01224995_01226178
CI01000048_01214358_01215546.mRNA mRNA upstream 52737 1214358 ~ 1215774 (+) False CI01000048_01214358_01215546
CI01000048_01136676_01137044.mRNA mRNA upstream 131139 1135812 ~ 1137372 (+) True CI01000048_01136676_01137044
CI01000048_01067628_01068912.mRNA mRNA upstream 198168 1067366 ~ 1070343 (+) True CI01000048_01067628_01068912
CI01000048_01003499_01009234.mRNA mRNA upstream 257999 1002748 ~ 1010512 (+) True CI01000048_01003499_01009234
CI01000048_01299946_01304448.mRNA mRNA downstream 30625 1299556 ~ 1304886 (+) True CI01000048_01299946_01304448
CI01000048_01322005_01325973.mRNA mRNA downstream 53074 1322005 ~ 1326130 (+) True CI01000048_01322005_01325973
CI01000048_01357896_01360700.mRNA mRNA downstream 88181 1357112 ~ 1360744 (+) True CI01000048_01357896_01360700
CI01000048_01374716_01392617.mRNA mRNA downstream 105785 1374716 ~ 1392617 (+) True CI01000048_01374716_01392617
CI01000048_01482623_01492925.mRNA mRNA downstream 210808 1479739 ~ 1493233 (+) True CI01000048_01482623_01492925
TU232648 other upstream 52704 1214372 ~ 1215807 (+) True CI01000048_01214358_01215546
TU232496 other upstream 274542 993455 ~ 993969 (+) False G204824
TU232180 other upstream 606655 660719 ~ 661856 (+) False CI01000048_00659494_00667971
TU232089 other upstream 906850 361025 ~ 361661 (+) True G204472
TU232014 other upstream 982764 285270 ~ 285747 (+) True G204409
TU232734 other downstream 114024 1382955 ~ 1383698 (+) True G205026

Expression Profile