RNA id: TCONS_00017531


Basic Information

Item Value
RNA id TCONS_00017531
length 2024
RNA type mRNA
GC content 0.57
exon number 16
gene id XLOC_008867
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 168002 ~ 252813 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgtgtgtgttctcccgCTCCGGCGTGTGGATGAGGTTAATGCTGCTCTGCTGCACCTGGAAGGACGAACGCATGGGAGAGGAGgaagctggtGTGGGGTTGCCGGTGTGTTCGGGATGTGGACAGCAGATCTACGATGATCAGTATCTACAGGCGCTCAGCAGCGACTGGCACACGCTCTGCTTCAGgtgCTGTGAGTGTGGATCGTCTCTCTCGCACTGGTACTATGAGAAGGACGGACGGCTCTTCTGTAAGAAGGACTACTGGGCTAAATTCGGGGAGCTGTGCCACGGCTGCTCTGAGCCAATCAGCACCGGCCTCAtcatgGTCGCTGGAGAGCAGAAGTATCACCCAGAGTGCTTCAGCTGTCTGAGCTGTGGAGCGTTCATCGGTGACGGAGACACGTACGCTCTGGTGGAGAGATCCAAACTGTACTGTGGCCACTGTTATTACCGCAGCATCGTGACTCCGGTCAGCCTGCCCGACTCGCCCTGCTCCAGGATTCCTCACACCGTCACACTCGTCTCCATTCCTGCATCCACCGACGGCAAGAGAGGATTCTCCGTGTCCATCGATCAGGCCTCCAGTCCCAACGGATACAGCCCTGAACACAAACGCACCGTCAGAGTCTCACAggtgtACCCAGACTGCATCAGTCCGGATGTCAAGAACTCTATTCATGTTGGCGATCGCATCCTGGAGATCAATGGAACGCCAATCCAGAACGTTCCTCTGGACGAGatcgATCTGCTGATCCAGGAGACCAGTCGTCTGCTGCAGTTGACCATAGAGCACGATCCCCATGATCAGGGCCCGTCTGTGGATCATGTGGATGGGGGTCCGTCACCTTCTGGAGGCCCGAGCCCCATCACACGTCCACCCAGCCAGGATATCAGCAACCTGCGCTCTCGCATCATTACgcgcagCTACAGCATCGACAAGTCCCCAAGCTCCAGCAGTGCTCCGTCTCCTCTGTCTCTGAGGAAGGACATCGGCCGCTCTGAGTCTCTGCGCGGGGTCTCCAACCGCACACACCGCATATTCAGAGCCTCCGACCTGATCCATGGAGAGGTGCTGGGCACAGGCTGCTTCGGACAAGCCATCAAGgTGACGCACAGAGAGACTGGTGAGGTGATGGTGATGAAGGAGCTCATCCGCTTTGATGAGGAGACACAGAGGACTTTCCTCAAagaggtgaAGGTGATGCGCTGTCTGGATCATCCTAATGTGCTGAAGTTCATCGGTGTCCTCTACAAAGACAAGAGGCTGAACTTCATCGCGGAGTACATCAAAGGAGGAACACTGAGAGACATCATCAAgaacatggacagTAATTACCCGTGGGGGCAGAGAGTGAGCTTTGCTAAGGACATCGCCTCTGGGATGGCGTATCTGCACTCCATGAACATCATCCATCGAGACCTGAACTCACACAACTGTCTGGTCAGAGAGaataaGAGTGTGGTGGTGGCAGACTTCGGGCTGTCGCGGCTGATGGTGGAGGACCGCAGTGTGGAGCGCAGGAAAGCAGACCGCAGGAAGAGGTACACGGTGGTGGGAAACCCCTACTGGATGGCCCCGGAGATGATCCACGgGAAGAGCTACGATGAGAAGGTGGACCTCTTCTCCTTCGGCATCATGCTGTGTGAGATCATCGGCCGGGTGAACGCTGACCCGGATTATCTGCCGCGGGCGCTGGACTTTGGGCTGAACACTGCTGTGTTTCTGGAGGAGCACTGTCCTGCTGACTGCCCTGCTGCATTCTTCCCTATAGCGGCGCTCTGCTGCGACCTGGACGCCGAGAAAcggccTGCGTTCACCAAGCTGGAGTCGTGGCTGGAGGACCTGAAGATGCACCTGGAGCTGGGTCTGCATCTGGTGTCGGAGCTGGAGCTGCTCCATCAGGACTTCATGCAGAAACACACCAGCGGCGGCGGGAAAAACAGCCTGCACACACACCCCGAGCAGCCCGagtagaacacacacacacacacacacacacacatgacactGACCGAAGAGACG

Function

GO:

id name namespace
GO:0051496 positive regulation of stress fiber assembly biological_process
GO:0006468 protein phosphorylation biological_process
GO:0001878 response to yeast biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0016310 phosphorylation biological_process
GO:0043005 neuron projection cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061212-3 Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within response to yeast. Predicted to be active in cytoplasm; neuron projection; and nucleus. Is expressed in several structures, including blood vessel; digestive system; fin; nervous system; and pronephric duct. Orthologous to human LIMK1 (LIM domain kinase 1).

Ensembl:

ensembl_id ENSDART00000163441

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019093 lncRNA downstream 78763 84837 ~ 89239 (-) True XLOC_008863
TCONS_00019092 lncRNA downstream 83787 81571 ~ 84215 (-) True XLOC_008862
TCONS_00018806 lncRNA upstream 2472 255285 ~ 260813 (-) True XLOC_008868
TCONS_00017533 lncRNA upstream 29918 282731 ~ 289577 (-) False XLOC_008869
TCONS_00017532 lncRNA upstream 29918 282731 ~ 289577 (-) False XLOC_008869
TCONS_00017534 lncRNA upstream 29918 282731 ~ 290507 (-) True XLOC_008869
TCONS_00018807 lncRNA upstream 121567 374380 ~ 377966 (-) False XLOC_008871
TCONS_00017530 mRNA downstream 4416 119057 ~ 163586 (-) True XLOC_008866
TCONS_00017529 mRNA downstream 59588 105955 ~ 108414 (-) True XLOC_008865
TCONS_00017527 mRNA downstream 60102 102925 ~ 107900 (-) False XLOC_008865
TCONS_00017528 mRNA downstream 61313 105955 ~ 106689 (-) False XLOC_008865
TCONS_00017526 mRNA downstream 70797 93131 ~ 97205 (-) True XLOC_008864
TCONS_00017536 mRNA upstream 160730 413543 ~ 419597 (-) True XLOC_008872
TCONS_00017538 mRNA upstream 180222 433035 ~ 434503 (-) False XLOC_008875
TCONS_00017539 mRNA upstream 196284 449097 ~ 452347 (-) True XLOC_008876
TCONS_00017540 mRNA upstream 201536 454349 ~ 462783 (-) True XLOC_008877
TCONS_00017541 mRNA upstream 211416 464229 ~ 477223 (-) True XLOC_008878
TCONS_00017535 other upstream 96638 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017537 other upstream 172882 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017597 other upstream 1068977 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017627 other upstream 1582158 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017639 other upstream 2013156 2265969 ~ 2266083 (-) True XLOC_008927

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000092_03957253_03983692.mRNA True 2894 mRNA 0.51 18 CI01000092 3956721 ~ 3983692 (-)
bowfin (Amia calva) AMCG00005707 True 3149 mRNA 0.55 16 CM030142.1 8247708 ~ 8275344 (+)