RNA id: TCONS_00017539


Basic Information

Item Value
RNA id TCONS_00017539
length 664
RNA type mRNA
GC content 0.51
exon number 3
gene id XLOC_008876
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 449097 ~ 452347 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACGAGAGAAAGAGAAACACACGAACACACAACCAGAAGACAGAGAGCGAGCAGCAATGGAGAATGCAGAAAGGTGAAGAGTGATGAGTCtgctgtaaaacacacacatgttCAGTGCGTGTGAATATATGGAGGATCAGCCTAATGAGGGCCGCATggatgcacaacacacacacgctCTGCCTCATCTCCTGTCTCCTGCTCTACACTCAGGCGGTCAGTGTTCATCTGGAGCAGACCTCGGTCACCGCACCGGTTCAGGGATCTGCTCTGTTCTCGGTGTCCGTCTCGGGGTCTGCAACGGTCAGATGGAGCTTCAGTTCTGCACAGCTCCAGCAGCTCCCGGTGGCCGTCTGGATCCTCGGCGGAGCTGCAAACGTCTCTCAGATGTACGAGGGTCGAGTGCAGACACACCTCAACGGATCCCTGACGCTGACCCGACTGCGGCTGCAGGACTCTGGATACTACAGACTCACTGTGACGGAGGAGAACGGCGGATCCAGAGACACGGGGCTGATGCTGAGCGTCAGAGAGGTGCTGTATGAGGACACGCGGTTCCTGCTGGTGTTTGTGCTGGTGTTGGGGACTCTGGCTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000115233

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019096 lncRNA downstream 12567 434443 ~ 436530 (-) False XLOC_008875
TCONS_00019097 lncRNA downstream 12567 434462 ~ 436530 (-) True XLOC_008875
TCONS_00019095 lncRNA downstream 12654 434096 ~ 436443 (-) False XLOC_008875
TCONS_00018808 lncRNA downstream 19450 428419 ~ 429647 (-) True XLOC_008874
TCONS_00019094 lncRNA downstream 70910 374380 ~ 378187 (-) True XLOC_008871
TCONS_00017552 lncRNA upstream 140247 592594 ~ 595263 (-) False XLOC_008883
TCONS_00017553 lncRNA upstream 148500 600847 ~ 601359 (-) True XLOC_008883
TCONS_00019098 lncRNA upstream 170362 622709 ~ 633408 (-) True XLOC_008885
TCONS_00019099 lncRNA upstream 273069 725416 ~ 727742 (-) False XLOC_008890
TCONS_00019100 lncRNA upstream 360749 813096 ~ 815019 (-) True XLOC_008893
TCONS_00017538 mRNA downstream 14594 433035 ~ 434503 (-) False XLOC_008875
TCONS_00017536 mRNA downstream 29500 413543 ~ 419597 (-) True XLOC_008872
TCONS_00017531 mRNA downstream 196284 168002 ~ 252813 (-) True XLOC_008867
TCONS_00017530 mRNA downstream 285511 119057 ~ 163586 (-) True XLOC_008866
TCONS_00017529 mRNA downstream 340683 105955 ~ 108414 (-) True XLOC_008865
TCONS_00017540 mRNA upstream 2002 454349 ~ 462783 (-) True XLOC_008877
TCONS_00017541 mRNA upstream 11882 464229 ~ 477223 (-) True XLOC_008878
TCONS_00017542 mRNA upstream 47501 499848 ~ 506010 (-) True XLOC_008879
TCONS_00017543 mRNA upstream 91397 543744 ~ 551177 (-) False XLOC_008880
TCONS_00017544 mRNA upstream 91399 543746 ~ 551181 (-) True XLOC_008880
TCONS_00017537 other downstream 23341 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 99530 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017597 other upstream 869443 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017627 other upstream 1382624 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017639 other upstream 1813622 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017647 other upstream 2172681 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 2284036 2736383 ~ 2736498 (-) True XLOC_008940

Expression Profile

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