RNA id: TU343816



Basic Information


Item Value
RNA id TU343816
length 476
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G302680
representative True

Chromosome Information


Item Value
chromosome id CI01000091
NCBI id null
chromosome length 1322612
location 591093 ~ 591568 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCCCCTCCTCTCATGGGATTAAAACAATGAAACAAGAGATGCTGGAGAGTCTCAACCAATGGTTTGCAAAAGTGGAGGTGGTGAAAAGTGTGTCTTTGCCTGTCTTCTGAATTTAAGATACAAGGCACATGCATTTTCATCTGACAAATGCTAAAGATTGGCTTAAGGAGGAGGCTGATAGCCTAGCAACACAACACACAAACCACACAAGGTGAAGGGACCCAGTCAGTTGACTAAAAAGTCAGGCCTAAACACGAGCACAACACATCCCTAAAGTGCCAGCAGAGATTGTTAACTAGACTATCCCCTGTGAAGGCCTCATCGACATGACAGCCAATGGCACAGATCCTCAATAAACCCGTCTCCACATCAGCGTGATGAATCCGATCTTAAACCAGATGGAACTGGATTAAATATTTTGAATATTCCGATCCCAATCTGACTTCTGACCTGTAGTGCTGCCTGAATCATAATCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU343788 lncRNA upstream 197202 393686 ~ 393891 (+) True G302653
TU343765 lncRNA upstream 244120 344248 ~ 346973 (+) True G302630
TU343771 lncRNA upstream 256003 334525 ~ 335090 (+) True G302636
TU343769 lncRNA upstream 257161 333688 ~ 333932 (+) True G302634
TU343766 lncRNA upstream 282941 307932 ~ 308152 (+) True G302631
TU343824 lncRNA downstream 21646 613214 ~ 613703 (+) True G302688
TU343826 lncRNA downstream 23837 615405 ~ 615789 (+) True G302690
TU343832 lncRNA downstream 44956 636524 ~ 636744 (+) True G302696
TU343833 lncRNA downstream 45758 637326 ~ 637757 (+) True G302697
TU343837 lncRNA downstream 48773 640341 ~ 640649 (+) True G302701
CI01000091_00457499_00460775.mRNA mRNA upstream 128440 457499 ~ 462653 (+) True CI01000091_00457499_00460775
CI01000091_00438822_00455209.mRNA mRNA upstream 135740 438822 ~ 455353 (+) True CI01000091_00438822_00455209
CI01000091_00390010_00390965.mRNA mRNA upstream 200031 389933 ~ 391062 (+) True CI01000091_00390010_00390965
CI01000091_00382012_00384325.mRNA mRNA upstream 206504 381775 ~ 384589 (+) True CI01000091_00382012_00384325
CI01000091_00375689_00376318.mRNA mRNA upstream 214454 375407 ~ 376639 (+) True CI01000091_00375689_00376318
CI01000091_00607895_00625729.mRNA mRNA downstream 16022 607590 ~ 625944 (+) True CI01000091_00607895_00625729
CI01000091_00784583_00790474.mRNA mRNA downstream 192695 784263 ~ 790484 (+) True CI01000091_00784583_00790474
CI01000091_00791956_00794999.mRNA mRNA downstream 199992 791560 ~ 795003 (+) False CI01000091_00791956_00794999
CI01000091_00844497_00846211.mRNA mRNA downstream 252869 844437 ~ 846372 (+) True CI01000091_00844497_00846211
CI01000091_00893581_00897135.mRNA mRNA downstream 301551 893119 ~ 897140 (+) True CI01000091_00893581_00897135
TU343815 other upstream 1567 586912 ~ 589526 (+) True G302679
TU343606 other upstream 528926 59635 ~ 62167 (+) True G302512
TU343910 other downstream 364342 955910 ~ 957032 (+) True G302768
TU344339 other downstream 461055 1052623 ~ 1053014 (+) True G303132

Expression Profile