RNA id: TCONS_00017645


Basic Information

Item Value
RNA id TCONS_00017645
length 1682
RNA type mRNA
GC content 0.47
exon number 3
gene id XLOC_008931
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2589949 ~ 2596125 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ccTGTGTATTGCCGGATGCAGGTTCTGGTGTGTCCGTGGTAATGGCGGAGGTCACCGGCAGTGTGAGGAATGCAGTAAACAAGCTATCTGCCTTCAAAACGTTATTAagtcttcatcatcatcctcatggTCCTGTGGTGGATTCCCGCGCGTTGTGCCGTAAATCTAACGTGTGTGTCCACTGGTGTGCTGCTGACTGTGTGTGGGCGCTTCATAATAAACACGCACAGCTCTACAGACCCCAGATCAGTGGATGCTACACCCTTGTGTCTGCTAAACACTGGTGTCTGCTGTTAAGACCGGTGGGATCACGGTTATACAGCTGCAGGACAGCAGATGAGAGCTCTGGGCTGCTCCACCGCAGCCGCACCGCCTACTATGACATCCTGAAAGTGTCTCCGAACGCGACGCATGCGCAGATAAAGAGCGCCTATTATAAGCAGTCCTTCATTTACCACCCTGACCGGAACCGCAGTGAGGACGCGGCACGACAGTTCGCACTCGTAGCCGAAGCCTACAATGTGCTGGGCAGCAGCAGTCTCAGGAGGAGATACGACCGAGGCATCTTGACCCAGAAAGAGGTGCAGAGCTCAGGCAGACCTGCGGCTCCTCCGCCCCCCCGCCGCGCTCCGGCCTCCGGGAAAACGGCACACTTTGACTTTGACGCGTTTTACCAGGCGCATTACGGAGAGCAGCTGCAGAGAGAGAAACTGCAGAGACTCCGACAGCAGCAGATCCAGCAGCGGCGCATGGAGATGCAGAAACAGTGGAGACGGGAGCAAATCACCGGAGTCTCCGttatactgctgctgctgctcggAGGCGTCATCATCAACAGCCTCAAATCATGAGTCAGGGAATGTTTGGGGAGATTAAACCTTAAATGCATTAGAAAGTTTAAAGTGGTCATGtggggatagctcacccaaaaataaaataaaaattctgccatcatcaGATTATATTtgagttgaacacaaaggaagatgacCTGAAGAATGCTGGAGAATAAATTCAGCCACTGACTTCCAGAGTATTTTGTTGTTCCTATTATGGATATCAACAGCTGTTTTTtccccagcattcttcagaatatcttgccTTGTGTTCAATAAAAGTTTTGAcacacctgagggtgagtaaataattaagacatttttattttggggtgaactgtacctttaatcaTGGCAGAGTCTGTTTCCTATGGAAGCTTGTTcacagaataaaatatatatatatatatttaaaaacaaatgtaattcagtCTTTCTGGATACATgtcttactttaaaaaagtgtaaACTATCTAACttatgtttatttacaaagataCTATCACTGGTTTTCCGCACATGTAACCCCACCAATCCTATACCGACCAACCCGCtttgagctgggattgaaccggcgattctccacatgggagtcggttgcactaacaaggaggctaaagaccacagCCCTTAgcctctgtcgctagagcaccttcagAGTTTAGATGAGtcaggtttacctgcacagcacttcactagctggcctctgctacacacttaataaataataatgaagggAAATGACGCAGCACAACACCAGCAGGGGTCACTCTTACATCATTACACTAGTAatacagttttttgttgttgtttacacacaattatttGCACTTTAGACCAGGGGCG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-532 Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in Williams-Beuren syndrome and nuclear type mitochondrial complex I deficiency. Orthologous to human DNAJC30 (DnaJ heat shock protein family (Hsp40) member C30).

Ensembl:

ensembl_id ENSDART00000114923

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017644 lncRNA downstream 70346 2517783 ~ 2519603 (-) True XLOC_008930
TCONS_00019112 lncRNA downstream 261665 2323666 ~ 2328284 (-) True XLOC_008928
TCONS_00017640 lncRNA downstream 261804 2323666 ~ 2328145 (-) False XLOC_008928
TCONS_00017629 lncRNA downstream 704710 1855023 ~ 1885239 (-) True XLOC_008923
TCONS_00017624 lncRNA downstream 755127 1830270 ~ 1834822 (-) False XLOC_008922
TCONS_00017646 lncRNA upstream 2679 2598804 ~ 2611170 (-) True XLOC_008932
TCONS_00019113 lncRNA upstream 22154 2618279 ~ 2625928 (-) False XLOC_008933
TCONS_00019114 lncRNA upstream 217391 2813516 ~ 2816142 (-) True XLOC_008942
TCONS_00017662 lncRNA upstream 322132 2918257 ~ 2931021 (-) True XLOC_008946
TCONS_00019115 lncRNA upstream 519212 3115337 ~ 3116262 (-) True XLOC_008951
TCONS_00017643 mRNA downstream 70309 2510761 ~ 2519640 (-) False XLOC_008930
TCONS_00017641 mRNA downstream 92381 2490204 ~ 2497568 (-) False XLOC_008929
TCONS_00017642 mRNA downstream 96178 2490235 ~ 2493771 (-) True XLOC_008929
TCONS_00017636 mRNA downstream 401527 2182103 ~ 2188422 (-) False XLOC_008926
TCONS_00017638 mRNA downstream 401617 2182691 ~ 2188332 (-) True XLOC_008926
TCONS_00017648 mRNA upstream 35296 2631421 ~ 2632891 (-) True XLOC_008934
TCONS_00017649 mRNA upstream 42759 2638884 ~ 2640966 (-) True XLOC_008935
TCONS_00017650 mRNA upstream 54662 2650787 ~ 2652640 (-) True XLOC_008936
TCONS_00017651 mRNA upstream 59441 2655566 ~ 2657508 (-) True XLOC_008937
TCONS_00017652 mRNA upstream 104521 2700646 ~ 2726662 (-) True XLOC_008938
TCONS_00017639 other downstream 323866 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017627 other downstream 752066 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017597 other downstream 1268043 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017537 other downstream 2164193 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 2240382 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017647 other upstream 28903 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 140258 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017689 other upstream 1508283 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017694 other upstream 1769033 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017700 other upstream 1830369 4426494 ~ 4482147 (-) False XLOC_008974

Expression Profile

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