RNA id: TCONS_00017652


Basic Information

Item Value
RNA id TCONS_00017652
length 1913
RNA type mRNA
GC content 0.48
exon number 9
gene id XLOC_008938
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2700646 ~ 2726662 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TACACGACGTCTAGTAAACGATTAACCCGAAGAATCACCTGAAAGTAAGACGCAAGCCCAGCCCACTGCATTTCCCATCCCCATTATCTGCCTTCAAACTAAACCAGTGACAACAACTCGACGACTCGCTTTCACAGGCATACATGAAGACCCGAGGCTCTTTTTAAATCTCTTCGCACTGGAGCTCCATCAGCTATTAAAATGGAAGTGAGCGAGGATTTCTACATGTTTGAGTTCAGCAATGCTGAAGATGATGCGCCGGTTTATCAGGACTCTGAGGACTTGTTTGCGGCTCTTCGGCAAAAGGAGGATGAAGTTATACTCGCTGCTCAGGTGGGAAATGCTTTGCTCATGGAAAACAGACAGATGAAGGAAGAAAGGGACACTTTTCTGGAAAAATACACACAGCAGATTGAGGAGCTCCAGCAGAGCAGGTACGAGCTGCAGGTGAAGCTGGAGAACTGCCAGGCTCAGTGGGAGGGTCAGGTGTCGGAGCTGGAGCGAGACGTGCAGGAACTGCAAGCGCAGGTGGAGGAAATGAAGCAAAGTCTCCATGAGGCTGAAATAGAGAAGAGCAGACTGAAGCAAGAGCACGGCGAACAGTGCCAGAGACTCAGACAGCAACTGCAGAGGGGAATAGAGGTGGAGCGAGCCATGACCGGCGAACTGCAAAGACTGAAGCAGGAAATGAGAGAAAGAGGACAGGCCAGACCTCAAGATGAAGAGATGATCAATGCTCTTAGAGAACAGgttGCACGACTCACACAGAGAGAGCAAACACTGGAGCAGCGCTTGAAAATGTCCTGTCATGAGAATGAAGAACTGAGAGACACGGTGTCCTCACTATACACACGCCTGGATCTGCAGGAACAAcagactcacaaacacacacaacagCTGGCAGAGGCCTGGCAGGAAGTTGACAGGGTTCGTTTCTGGGCACAAGATCTGCAGAGTCAGGTAGTGGAGCTCCAGGATGAAGTGGCGCTCCAGGAGAAGAGTCACAGTGACACATCTTTACTGTCCGAACTCGAAAACAACCTGGACGTCACAAACTGGAGCCTGAACACAGAGCAGATCTCTCAGGAGGTGCACCACATCCTGGAACTGCTTCAACCTGTAATCTGCGGCTCAGTAGCTGAACGGGACTCAGATGACAGCCTGCAGGGCATGATGGGACAGTTGAAACATGCTGCAGAATGGATAGCACAGAGTCAAACACAACAGAACGAGAGTCTTTTAGCAGAAAACGCCAAACTCAAGCTGCAAACCGAGAGACTTCTGGATGAGGAGGTGGTCCAGCAGGCCTTAAAGGACCGCGATCATGCCTTTGCAAAGAAGACAGCGATGGAAGCAGAGCTGCTGAAGACTAAACAAGATATGATGTGCTTAAACAACCAACTCCTGGAAGCCATCCAGCGAAAACTTGAGCTCTCGCAGGAACTCGAAGCCTGGAAGGACGATATGCAAGTTATCATCAACCAACAGCTCAGGAGCCAACAGGAAACAGAACAGCAGCAACGGAAGTCATCTGTCGGTCGTCTTTCTTTCCTGCACAAATCCAGACGGCCTTCATCTTCGCCGTCCACGTTTTCAGAGATCAGTTCAGTGCAAAACCACTCGCCTTGGAGAGACTGGctcaaaatcaacaaataaacctGTTGCACGATCTCACCAGCAGATCCCCTGCCAAACTGAGACCTTATTAGATCAGTGTTGAGTTAACGAACAACTCTAATGTAAAAGACTCTTCCATAATAGACATTTACATCTCACATTGGAATTGCTCCTGCCAAAAGTTACGTCTTGACATTCAGTACAATCGAACACCTTACTAATGACGTACAACTGTAATGAATCCTGATCAATTTCATgtaaagaggtggtccactacaatatcgtatggtaaactt

Function

GO:

id name namespace
GO:0047496 vesicle transport along microtubule biological_process
GO:0055107 Golgi to secretory granule transport biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-233 Predicted to be involved in Golgi to secretory granule transport and vesicle transport along microtubule.

Ensembl:

ensembl_id ENSDART00000108856

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019113 lncRNA downstream 74718 2618279 ~ 2625928 (-) False XLOC_008933
TCONS_00017646 lncRNA downstream 89476 2598804 ~ 2611170 (-) True XLOC_008932
TCONS_00018809 lncRNA downstream 104525 2590381 ~ 2596121 (-) True XLOC_008931
TCONS_00017644 lncRNA downstream 181043 2517783 ~ 2519603 (-) True XLOC_008930
TCONS_00019112 lncRNA downstream 372362 2323666 ~ 2328284 (-) True XLOC_008928
TCONS_00019114 lncRNA upstream 86854 2813516 ~ 2816142 (-) True XLOC_008942
TCONS_00017662 lncRNA upstream 191595 2918257 ~ 2931021 (-) True XLOC_008946
TCONS_00019115 lncRNA upstream 388675 3115337 ~ 3116262 (-) True XLOC_008951
TCONS_00019116 lncRNA upstream 433776 3160438 ~ 3162459 (-) True XLOC_008952
TCONS_00019117 lncRNA upstream 1027904 3754566 ~ 3760957 (-) True XLOC_008957
TCONS_00017651 mRNA downstream 43138 2655566 ~ 2657508 (-) True XLOC_008937
TCONS_00017650 mRNA downstream 48006 2650787 ~ 2652640 (-) True XLOC_008936
TCONS_00017649 mRNA downstream 59680 2638884 ~ 2640966 (-) True XLOC_008935
TCONS_00017648 mRNA downstream 67755 2631421 ~ 2632891 (-) True XLOC_008934
TCONS_00017645 mRNA downstream 104521 2589949 ~ 2596125 (-) False XLOC_008931
TCONS_00017653 mRNA upstream 1008 2727670 ~ 2754056 (-) False XLOC_008939
TCONS_00017654 mRNA upstream 1279 2727941 ~ 2734560 (-) True XLOC_008939
TCONS_00017656 mRNA upstream 49844 2776506 ~ 2803313 (-) True XLOC_008941
TCONS_00017658 mRNA upstream 94106 2820768 ~ 2841677 (-) False XLOC_008943
TCONS_00017657 mRNA upstream 94106 2820768 ~ 2841677 (-) True XLOC_008943
TCONS_00017647 other downstream 74983 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017639 other downstream 434563 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017627 other downstream 862763 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017597 other downstream 1378740 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017537 other downstream 2274890 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017655 other upstream 9721 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017689 other upstream 1377746 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017694 other upstream 1638496 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017700 other upstream 1699832 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017702 other upstream 1708803 4435465 ~ 4482230 (-) False XLOC_008974

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000091_00309199_00325636.mRNA True 2122 mRNA 0.45 12 CI01000091 308968 ~ 325871 (+)