RNA id: CI01000091_00309199_00325636.mRNA


Basic Information

Item Value
RNA id CI01000091_00309199_00325636.mRNA
length 2122
RNA type mRNA
GC content 0.45
exon number 12
gene id CI01000091_00309199_00325636
representative True

Chromosome Information

Item Value
chromosome id CI01000091
NCBI id null
chromosome length 1322612
location 308968 ~ 325871 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAATAAAGTCGCGAGTTACCTGAAACTAACTCACAAGCCCAACCCACAGTTCCTTTCCATCATCCGCCTTCAAATAAAAAAAAAGAAAAAAAAAAAAAGAAAAACGCATGAGTGACAACCGCAGGACTCTCACCCACTCTCACATACAGAAGCACAAACGCATGGAGCGTTTTCACTTATAATACGGATGCCATGAGTCGGGGAGAAGTGCTGATACATAATATACATAAAATGGAAGTGGAGGAAGATTTCTACTCATATGAATTCAGTAATGATGACGATCTGCCGGTGTATAAGGACAGTGAGGAGTTGTTCGCAGCTCTTCGGCAGAAGGAGGATGACGTTCTTCTAGCTGCTCAGGTGGGAAATGCTCTGCTCATGGAGAACAGACAGCTGAAAGAAGAGAGAGACGCACTTCATGACAAATACATGCAGCAGCTGGAGGAGCTGCAGCAGGGCAAGTACGAGCTACGGGTGAAGCTGGATGACTGTCAGGCACAGTGGGAGAGTCAGGTGTCCGAGCTGGAGCGAGACGTGCAGGAGCTGCAGGCGCAGGTGGAGAGACTGAACCAGACTCTAAGTGAGGCTGAAAGAGAGAAGAGCAGACTGAAGCATGAGCACAGCGAACAGAGCCAGAGACTCAGAGAACAGCTGCAGAGGTGTAGCAGATATGAAATGGAAGAATGGGCCATCCACACAGTCCTAAGCTACAATATATGCTTAGTAAATCTATGGGTAACACAACAAGGTTCAGTTGTTAACTACACAAAGAAAGCTCAAAACAAGCATTTGTTTTTCCAGGAAAGCTGTGCCTTCCTGTTGGAGGGAGTAAACCTATCGGGATGCTACAAATACGCTTGCATCCTGCTAGGTTTCTCTCAGGTGGGTATGGAAGTGGAGCGAACCATGACCAGCGAGCTTCAAAGACTAAAACAGGAAATGAGAGAAAGGGGGCATGCCAGACCCCAGGATGAAGAAATCATCAATGCTCTTAGAGAACAGCTGGCAGAGGCCTGGCGAGAAGTGGATGGGGTTCGTTCCTGGGCACATGAGCTGCAGTCTCAGGTAGAGGAGCTCCAGGAGGAAGTGGCCCTCCAGAAGAAAAGTCACAACGACACATCTTTACTGTCTGAGCTTGAAAACAATCTGGACACCGCAAAATGGAGCCTGGACAAAGAACAGGTCTCTCAGGAGGTGCACTACATCCTGGAATTTCTTCGACCTGTAGCCTACAGATCAGAGATTGAACAGAACTCAGATGACAGCCTGCAGAGCATGCTGGGACAATTGAAACATGCAGCACAATGGATAGCACAGAGTGACACACTACAGTGGGAATTGCGTCAGAGTTTTGTTGTCCAGATTGGGGTGTGTTCAGTGGGCATCAATGAAGCCACAAATGTAGCCAGAGGTAGAAATGGAGAGAGAGAAAAAGAGGGACAGATGGAACAGAGGGCCGTTTATGAGATGAGGAAGCCCATTGTGGAACCAGTGAGCGATCCTTGTGAGAATGTCATCCGGATACAGGAGCTACAGGATCAGAATGAGCGTCTCATAGCAGAAAACGCCAAACTCAAGCTGCGGCTTATGGACGAGGAAGTAGTTCAGCAGGCAATAAAGGACCGTGATGATGCCATCGCAAAGAAGACAGCGATGGAAGCAGAGCTTCTGAGGACTAAGCAAGATATGATGTGTTTAAACAATCAACTCCTGGAAGCCATTCAGCGTAAACTTGAGCTGTCACAGGAACTGGAGGCCTGGCAGAAACACATGGTCACATGTGGAACACATCCTTTGCACATGGGAAATGTGGTCTTGGAACAGTTCTCTTGTGAAATCCATGTGATCTCATGGAAAACATGGGAAATTAATGTGGTTTTTCAGTAAGGGTTGGCTGAATCTCACAAAAACACATTTCTCCCCAAACTCAAAAAATAAAAAGAAGTAATATTTTGTATGAAGATAATTAACTTTTTAGAACTTTTTTGTGTGACATTTTTGTGACAATCAAGCACATTACCTTTTCAAACTTGTCATAAATGTAATGCATTCAGATGTTTTACCTGTTATTTCATTTTTAATTCCCATTATTGTCAAAGGTGATCATCACTGAACTCTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU343766 lncRNA upstream 816 307932 ~ 308152 (+) True G302631
TU343735 lncRNA upstream 39273 269406 ~ 269695 (+) True G302611
TU343733 lncRNA upstream 43839 264926 ~ 265129 (+) True G302609
TU343727 lncRNA upstream 52320 256130 ~ 256648 (+) True G302603
TU343725 lncRNA upstream 55302 253367 ~ 253666 (+) True G302601
TU343769 lncRNA downstream 7817 333688 ~ 333932 (+) True G302634
TU343771 lncRNA downstream 8654 334525 ~ 335090 (+) True G302636
TU343765 lncRNA downstream 18377 344248 ~ 346973 (+) True G302630
TU343788 lncRNA downstream 67815 393686 ~ 393891 (+) True G302653
TU343816 lncRNA downstream 265222 591093 ~ 591568 (+) True G302680
CI01000091_00277114_00290224.mRNA mRNA upstream 18744 277114 ~ 290224 (+) True CI01000091_00277114_00290224
CI01000091_00247680_00252574.mRNA mRNA upstream 56239 246921 ~ 252729 (+) True CI01000091_00247680_00252574
CI01000091_00192431_00197288.mRNA mRNA upstream 111500 192431 ~ 197468 (+) False CI01000091_00192431_00197288
CI01000091_00161029_00165225.mRNA mRNA upstream 143486 160989 ~ 165482 (+) True CI01000091_00161029_00165225
CI01000091_00120666_00139417.mRNA mRNA upstream 169183 120666 ~ 139785 (+) True CI01000091_00120666_00139417
CI01000091_00359388_00360200.mRNA mRNA downstream 32718 358589 ~ 360617 (+) True CI01000091_00359388_00360200
CI01000091_00366037_00366669.mRNA mRNA downstream 40166 366037 ~ 367204 (+) True CI01000091_00366037_00366669
CI01000091_00368135_00368878.mRNA mRNA downstream 42264 368135 ~ 368939 (+) True CI01000091_00368135_00368878
CI01000091_00370016_00370645.mRNA mRNA downstream 43109 368980 ~ 371044 (+) True CI01000091_00370016_00370645
CI01000091_00375689_00376318.mRNA mRNA downstream 49536 375407 ~ 376639 (+) True CI01000091_00375689_00376318
TU343606 other upstream 246801 59635 ~ 62167 (+) True G302512
TU343815 other downstream 261041 586912 ~ 589526 (+) True G302679
TU343910 other downstream 630039 955910 ~ 957032 (+) True G302768
TU344339 other downstream 726752 1052623 ~ 1053014 (+) True G303132

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00017652 True 1913 mRNA 0.48 9 NC_007126.7 2700646 ~ 2726662 (-)