RNA id: CI01000091_00161029_00165225.mRNA


Basic Information

Item Value
RNA id CI01000091_00161029_00165225.mRNA
length 1047
RNA type mRNA
GC content 0.46
exon number 5
gene id CI01000091_00161029_00165225
representative True

Chromosome Information

Item Value
chromosome id CI01000091
NCBI id null
chromosome length 1322612
location 160989 ~ 165482 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATAAATCTGGGGAACATAGGACACAGGGAACATAGAAAATGAATGACACCGGTGAGGGAAGTTTTCGTCAGGCTAGCAGTCTCAAACTGGATGTTAGGGTGGAGATAATCACCTTTTTTGGGTTAAGCCTGTTCTTTGCTTCCACCCGCTGTCAGTTCTCTGCCTGCCTCACCATCTGTCGCCCTTCCAGCACCAGAACAGATGCAGGTAGATTCCTTCCGTCTCACCTAAGCGGAGCATCAGAGAAGAATTCAACAACGACTTTGTCTCTACTGTGGGGAAGAAGGACACGTCATCGCCGTGTGTCCCATCCGACCACCACGCCCAGCGCGCAAGCCCTCCTAGACTCTGGATCAGCAGGAAACTTCATCAGCACTCAAGCTCTTCAGAAACTGAATGTACGCTGTAAACGATGTCAACAAGATCTACGGATCCAAACTATCCAAGGAAAGCCGCTGGGCCATGATCCCAGTGATGATGCGGTACCTCCTCCTCCCGACATCGCTGAGGAGGAGAACATCTACCGGGTGCGGGCGATTCTCGACTCTCGACGACGGGGTCCTGCGCTGGAATACCTCATCGACTGGGAGGACTGGGAGGCCCAGGACCATCCGGACCGCCCTGCTCCTCGGGGTCGAGGTCAATCAAGCCCGACAAACACTATTTTAAAGCAATTTATATTGAGTACTTCACTTCTGTGCTACAAGACATGTTCACTTCTATGCTATTGTAAATACAGCACATGCACAGTGATCTGGTTTAAGGGCTTACATCAAACAAACAGTTAAAAATAATTAAGTTCCCATGTGTCCTTAAATCCACCCTTCTGTTGGACAAATCAAGTGCCTGTAAAAACTAACCTAAAAGACAATTCATGTTTTACTGCTAAATACATTTGCACTATTTTGGCTTTACAAGAAAACACAAAGTAAGCATATGCTTGTCATGCTAAAAAGAAGTGATTATTTGCTTTTCTTTGTTTTTCAGTCATAAAAATGTGACACCCACAATTCCATCATTCCAGATCACAGACCACAGAGAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU343641 lncRNA upstream 9428 151038 ~ 151561 (+) False G302538
TU343638 lncRNA upstream 9428 151118 ~ 151561 (+) True G302538
TU343637 lncRNA upstream 9449 151038 ~ 151540 (+) False G302538
TU343636 lncRNA upstream 9449 151118 ~ 151540 (+) False G302538
TU343633 lncRNA upstream 12097 148671 ~ 148892 (+) True G302535
TU343663 lncRNA downstream 1880 167362 ~ 167582 (+) True G302551
TU343664 lncRNA downstream 2393 167875 ~ 168120 (+) True G302552
TU343666 lncRNA downstream 4514 169996 ~ 170454 (+) True G302554
TU343669 lncRNA downstream 6448 171930 ~ 172323 (+) True G302555
TU343675 lncRNA downstream 17316 182798 ~ 183821 (+) False G302561
CI01000091_00120666_00139417.mRNA mRNA upstream 21204 120666 ~ 139785 (+) True CI01000091_00120666_00139417
CI01000091_00039550_00086927.mRNA mRNA upstream 72804 39232 ~ 88185 (+) True CI01000091_00039550_00086927
CI01000091_00192431_00197288.mRNA mRNA downstream 26949 192431 ~ 197468 (+) False CI01000091_00192431_00197288
CI01000091_00247680_00252574.mRNA mRNA downstream 81439 246921 ~ 252729 (+) True CI01000091_00247680_00252574
CI01000091_00277114_00290224.mRNA mRNA downstream 111632 277114 ~ 290224 (+) True CI01000091_00277114_00290224
CI01000091_00309199_00325636.mRNA mRNA downstream 143486 308968 ~ 325871 (+) True CI01000091_00309199_00325636
CI01000091_00359388_00360200.mRNA mRNA downstream 193107 358589 ~ 360617 (+) True CI01000091_00359388_00360200
TU343606 other upstream 98822 59635 ~ 62167 (+) True G302512
TU343815 other downstream 421430 586912 ~ 589526 (+) True G302679
TU343910 other downstream 790428 955910 ~ 957032 (+) True G302768
TU344339 other downstream 887141 1052623 ~ 1053014 (+) True G303132

Expression Profile