RNA id: CI01000091_00247680_00252574.mRNA


Basic Information

Item Value
RNA id CI01000091_00247680_00252574.mRNA
length 3386
RNA type mRNA
GC content 0.48
exon number 5
gene id CI01000091_00247680_00252574
representative True

Chromosome Information

Item Value
chromosome id CI01000091
NCBI id null
chromosome length 1322612
location 246921 ~ 252729 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTACATATCTGGTCTCTGGAGCTGTGTTATCTTCAGCGTCACCGCATACAGTCCCGATGGGATTAACAGTTGATTAACATTTTGTCGCTTCCGTATGTTAACAGTGTATCGTTGCCGCACTTAAATACTTACAGGATCAGCTGGACTGCGGTCTGGACTTGGGGTATGGTGCTTATTTTCAATAGTACCGTGAGTAACTGATCTAAAAGTGGCGTGCGACAGGGTAGCTACTACCTGACTGTCACTTTCATTATTTTCTTTTTTTTTGGGGGTTATTGTGTTTGATTTAATTGTTTGTTTTTTTTTTGTTCACAGTGAGATGTGCCGTGTTGTGCTGTGGTGTGCTGTGGTGCGTGTGTGCACGTGTGAATGCTGTGTTCTCTCTGCTTAAAGGACACCAGGCCTTCCCCCACCCTGAAGTGGGATGTCTTGTTTTATTTTTAACTATTTGATACAGTGAATCAAATTGAATCTGTTTTGAATAGTTTTTTTTTTTTTTTTTTTTTTTTAACTCAACTCTGGTCTGATACCTGACCCAGTCATGACGAACCTGTGTGCCTTAATGTTGAGGGCAGTCCCAGAAATAGCCTCCGGGTGGCGTAGTCTGTATAATTTATTAGTTCGTAATGCCACATTTGGCGTAGTCGGCAGGGTATTCGACTGGTTATCAGATTCAGACTTTGAGGAGAGTTTTTTTTTTTTTTTTAACAGTACGCTGGTGGCAGAGTAGTGATTGGGTGAGTACCTTTGTGGCACGCCATGGATAGTGAATTGCAGGAGATGCGGGATTTGATAGCTCAATTACGGATGGATAATGAGAGGTTGCGACAGGAACGTGAGGCAGTTGAGCTTCCCGATCCTGGCGCACCTTCTGTTAGCGCAGCATGCCCATCCACACCTCGATCAGCTGATGTAAGTGCTGGTACCGTTGAAAGATTTGTATTTATTCCGAGGGACCGACGCTGCCCAAATTTTAATGGCAGGTCTGGTATCAGTATTGATGAGTGGCTTGAGGAGGCCCAAGCATGTATGCGAGCTCGGAATATGACCTCTGTGGAGCAGGCGTTTTTCTTGTATGCTCACCTTGAAGGAGAGGCCCGTAACGAGATTAAATACCGTTCTAGTGCTGAGAAAAGCGATCCAGATAAAATTATTGCAGCGCTGCGTGAAGTGTATGGTTGTGCCGAGTCGTACATCGCACTGCAAGAAGCATTTTTCTCTCGGCGGCAGCGCGAAGGAGAAACATTATTGGAGTTCTCCTTGGTGTTGTTGAGTCTGTTTGAGAAGGTAAAAAGCCAATCACCATGTGAAGTTTTAAATGGGGACTTAATTGTGAGGGATCAATTTGTCGAATGCGTGTCAGATAGTGCACTTCGTAGAGAATTAAAACAATTAATACGACGTCAGCCCACTGTAACGTTGCTAGAAGTTAGGGGAGAAGCGATCCGTTGGGAACGGGAGGGATTACCGGGGGTGTTAGAGGTAGAAGTCAGTCGGTCCCCCTGTTCGGTAGGGAGCGCGCATGGCTCTCGTATTGTTAATGGTAATGGAACTGCTTCCCGATTAGTGTCCTCATGTCCACACCTTGTTGTAAATATTGGTGGGGTTTCAGTACCCTGTCTGGTAGATACTGGTTCCATGGTGTCAACCATTACGGAGACTTGTTTCCGGTTGAGGTTTGAGCCATGGGGCCAGGATCGGTTGCAATCCTGTCACTGGCTGCAGCTTCGAGCAGCGAATGGATTGGAAATTCCGTATATTGGGTATCTCGAATTAGATATTGAACTGTGCGGTAATAAAATCCCTAATTGTGGAGTGTTGGTGGTCCGTGATCCTCCGGGCAGTGGCACAGACACTCCTGGTATTTTAGGCATGAATGTGCTTAGCCGCTGTTATCGGGAGTTGTTCGGTCGTCACGGATCCGCTTTATTTGAGTTGCCAAGTTTGACCAAGGATACAAATATGACCCAGGTACTTCAGAATTGTCAACAAATTGTTCGCGCTACTGACCGTAAGAGTAACGTAAAGGTAAGGGGGCGCCGGGTGTGTCGCATTTCTGGCGGCACGTTGACATTTGTCACGGCTACCTGCTCCTCCTTGCTCGCAGAGCAGATAGCATCGGTTGACTTGGTAGGATTGTCGGCCGAGGAACAGAAGCAGGTCAGGGCTCTCCTTCGGGAGTATCAAAGTGTGTGTTCGACGCACGAAGGAGACCTGGGTTGTACCAACCTGCTTTCCCACGAGATCCCCTTAACCGATGACATTCCAGTCCGGCAGCGGTATCGACGTATTCCACCGTCTGAGTATGAAGTGGTTAAGACCCATATCAGTCAGTTGCTAGACGCGCAAATCATCCGGGAGAGTTGCAGTCCGTACGCCTCCCCCGTCGTGTTAGTTAAAAAGAAGGACGGTAGTTTACGCATGTGCGTGGACTACCATCAGCTCAATTCTAAAACACGCAAGGATGCGTTTCCGTTACCTCGGATTGAGGAGACATTGGATTCATTGACCGGTGCCCACTGGTTTTCTACTCTAGATCTAGCTAGTGGGTATAACCAAGTTCCCGTATCTGAATCCGATCGCCCCAAAACTGCCTTTTGCACGCCTTTCGGGTTATTCGAGTGGAATCGTATGCCGTTTGGTTTGTGCAATGCGCCAAGTATGTTCCAGCGCCTGATGGAGCGGGTCTTTGGTGACCAGCGGCATCAGTCTGTGTTGCTGTACTTGGACGACATCATTGTGTTTTCATCGTCAGTGCAACAGCATGTAGAGAGTAAGGATGTGTATACAGTAGCTCCGGTTAATGACCTGACTCAAGTCCGGCACATCCATCGGTCAGCATTGAAACCTCGAGTCCAAGGGGAGGTGGTATCGGAGGACTTCTCCGAGAGTGCGGGTGATTCACCCGTGCCCTCAGAACCTGAGTTGGAATTGGAAGATGGGGACCTAGTGTATGTGGTTTCTGAGGTCCCATTGTTAGCTCATGGAGGGAGCACTATGAGATCAGATCCATCTGGAATGGTGCTTGTTGATGATCCTCCAGCACCCCCCCTGGAGTCTTCTAACCCGTTACGGGTGGTTCCACGTCAGACAGGACGAGTAGGGGCAGGTCAACATTCTAATGTGCACCGTTTACCACGGGCGATAGGAGCTGGAAATGAGTGGGGCGGCCGGCGGCAGCAGTGTAGCATCTTGTGGTGGTGTGCCTTTTACCTGCAGTGTTCACAGTGAGGTGTGCCGTGCTGTGCTGTGGTGCGTGTGTGCACGCGTGAGTGCTGTTCTCTCTGCTTAAAGGACGCCAGGCCTTCCCCCCCCACCCTGAAGTGGGATGTCTTTGTTTTATTTTTAACTATTTGATACGGTGAATCAAATTGAATCTGTTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU343715 lncRNA upstream 5650 241041 ~ 241271 (+) True G302592
TU343714 lncRNA upstream 6416 240295 ~ 240505 (+) True G302591
TU343702 lncRNA upstream 41231 205461 ~ 205690 (+) True G302579
TU343693 lncRNA upstream 52267 194433 ~ 194654 (+) True CI01000091_00192431_00197288
TU343689 lncRNA upstream 55738 190901 ~ 191183 (+) True G302566
TU343725 lncRNA downstream 638 253367 ~ 253666 (+) True G302601
TU343727 lncRNA downstream 3401 256130 ~ 256648 (+) True G302603
TU343733 lncRNA downstream 12197 264926 ~ 265129 (+) True G302609
TU343735 lncRNA downstream 16677 269406 ~ 269695 (+) True G302611
TU343766 lncRNA downstream 55203 307932 ~ 308152 (+) True G302631
CI01000091_00192431_00197288.mRNA mRNA upstream 49453 192431 ~ 197468 (+) False CI01000091_00192431_00197288
CI01000091_00161029_00165225.mRNA mRNA upstream 81439 160989 ~ 165482 (+) True CI01000091_00161029_00165225
CI01000091_00120666_00139417.mRNA mRNA upstream 107136 120666 ~ 139785 (+) True CI01000091_00120666_00139417
CI01000091_00039550_00086927.mRNA mRNA upstream 158736 39232 ~ 88185 (+) True CI01000091_00039550_00086927
CI01000091_00277114_00290224.mRNA mRNA downstream 24385 277114 ~ 290224 (+) True CI01000091_00277114_00290224
CI01000091_00309199_00325636.mRNA mRNA downstream 56239 308968 ~ 325871 (+) True CI01000091_00309199_00325636
CI01000091_00359388_00360200.mRNA mRNA downstream 105860 358589 ~ 360617 (+) True CI01000091_00359388_00360200
CI01000091_00366037_00366669.mRNA mRNA downstream 113308 366037 ~ 367204 (+) True CI01000091_00366037_00366669
CI01000091_00368135_00368878.mRNA mRNA downstream 115406 368135 ~ 368939 (+) True CI01000091_00368135_00368878
TU343606 other upstream 184754 59635 ~ 62167 (+) True G302512
TU343815 other downstream 334183 586912 ~ 589526 (+) True G302679
TU343910 other downstream 703181 955910 ~ 957032 (+) True G302768
TU344339 other downstream 799894 1052623 ~ 1053014 (+) True G303132

Expression Profile