RNA id: TU343689


Basic Information

Item Value
RNA id TU343689
length 256
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G302566
representative True

Chromosome Information

Item Value
chromosome id CI01000091
NCBI id null
chromosome length 1322612
location 190901 ~ 191183 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTTTTACAGATGCTAGAAACATGGCCTTCAAATGAAAGATTGGTATCAAAGAGCACACCCAGGTTCCTAAGAGACGACGAAGACTTAACAGAGCAGCCATCAAGTGTTAGACAGTATTCTAGGTTATTACGTGAAGAAGTTTTTTCTGAATTTAGTAGTAGGAAATTACTGGTCATCCAATTTTTTATATCAGCTATGCATTCTGTTAATTTTGTGAATTGGTAAGTTTCGTCAGGGCGCGAAGAAACATAGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU343683 lncRNA upstream 1000 189520 ~ 189901 (+) False G302565
TU343682 lncRNA upstream 1000 189664 ~ 189901 (+) True G302565
TU343680 lncRNA upstream 3697 186807 ~ 187204 (+) True G302563
TU343675 lncRNA upstream 7080 182798 ~ 183821 (+) False G302561
TU343677 lncRNA upstream 7310 183010 ~ 183591 (+) True G302561
TU343693 lncRNA downstream 3250 194433 ~ 194654 (+) True CI01000091_00192431_00197288
TU343702 lncRNA downstream 14278 205461 ~ 205690 (+) True G302579
TU343714 lncRNA downstream 49112 240295 ~ 240505 (+) True G302591
TU343715 lncRNA downstream 49858 241041 ~ 241271 (+) True G302592
TU343725 lncRNA downstream 62184 253367 ~ 253666 (+) True G302601
CI01000091_00161029_00165225.mRNA mRNA upstream 25419 160989 ~ 165482 (+) True CI01000091_00161029_00165225
CI01000091_00120666_00139417.mRNA mRNA upstream 51116 120666 ~ 139785 (+) True CI01000091_00120666_00139417
CI01000091_00039550_00086927.mRNA mRNA upstream 102716 39232 ~ 88185 (+) True CI01000091_00039550_00086927
CI01000091_00192431_00197288.mRNA mRNA downstream 1248 192431 ~ 197468 (+) False CI01000091_00192431_00197288
CI01000091_00247680_00252574.mRNA mRNA downstream 55738 246921 ~ 252729 (+) True CI01000091_00247680_00252574
CI01000091_00277114_00290224.mRNA mRNA downstream 85931 277114 ~ 290224 (+) True CI01000091_00277114_00290224
CI01000091_00309199_00325636.mRNA mRNA downstream 117785 308968 ~ 325871 (+) True CI01000091_00309199_00325636
CI01000091_00359388_00360200.mRNA mRNA downstream 167406 358589 ~ 360617 (+) True CI01000091_00359388_00360200
TU343606 other upstream 128734 59635 ~ 62167 (+) True G302512
TU343815 other downstream 395729 586912 ~ 589526 (+) True G302679
TU343910 other downstream 764727 955910 ~ 957032 (+) True G302768
TU344339 other downstream 861440 1052623 ~ 1053014 (+) True G303132

Expression Profile