RNA id: CI01000091_00192431_00197288.mRNA


Basic Information

Item Value
RNA id CI01000091_00192431_00197288.mRNA
length 1335
RNA type mRNA
GC content 0.39
exon number 4
gene id CI01000091_00192431_00197288
representative False

Chromosome Information

Item Value
chromosome id CI01000091
NCBI id null
chromosome length 1322612
location 192431 ~ 197468 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTCCAAAAGATCCTGTCAGAGGGGCTCGGAAAAGAGCAGGGGATTTGAATGGGAGGAATGCAGGCTTTCCATCTTCGAGGATATGTCGAGGGAGAGAGCATTGATGAGGAAAAAATTCTCAGCAGCGAAGAAGTTACTCTGGGACCGTGAGATTCGACATGCCCTGGTTCATCCAACCACTCTGAAGTTTACTTGGAAGGGAAAAAAGCAGAGTTTTACTGACCACGTGGAAGCGGAAAGATATATAAAGGAACACATCCAACTACAAGGAGGCTGTGACTGGAAATATGATGACATAAAGATGTTTTTTGAAATTAATATTGGGTCAGCTCAGAGATTAGCAGTATGGGATGCATGTAAAGCATTTATCATGGGAAAATATATTGCTTATGCAAGTAGGGAAAAAAAAAAAAGTGTAGGAAAAGTGAAACTATTAGAAAAACAAATCAGTGATCTAGAAAAAGAATTGGTGCAACGTTTTACAGATTTGAAATTTAAACAGCTTTGTCAATTAAAATTTGATCTCCATGAATTCTTTAATAAAAAAACAGAATATGCATTATTTAGAATGAAGACCAAGTATTATGAGAGTGGGGAAAAATCTGGGAAACTTCTTGCTAGACAGATAAAGCAACATGATGCATGTCACATCATACCTGCAATTAAGAAGGGCAATAAGGTGCTCACTTCCAACAGAGAAATTAATAGGGTTTTCAACCAGTACTATTCAAAACTGTACACATCAGAATCCATTTACAGTCAGAAGGAAATAAAAGACTTTCTAGCTAATGTTACATTGCCCACTTTAACCCCTGACGAACAAGCCTCAATAGTTGGACCTATAACACAAGAGGAGGTCAGAACTATTATAATGTCTTTGAAACCTGGAAAATCACCAGGCTCTGACGGATTCCCAGTAGAATATTATAAGAAGTTTGTCGATGAGTTGACCCCAATATTAACTGAGATATATAAGCGATATAATGCTCCAGTGGCAGTCAGGCAGTGGCAGCATTCCATGATTTCAGGAGCAAAGCCCTGCCGCCCCATGAGAAGCATATTTGGAGTCACTGGATCTGGACTGGCAACATCAAATGAATGTGGAGATCTCATCAGGAGGCTTAGAATTGAAAATCCCTTTCATTTTAACTAGGAAAGTGTGAAGCACATCCTCTGACAATGGTTGACTTATTACTACAACCTGGAGTACACTCTTGGTGGAATCTCTCGCTCTGGTTGGAGCTGTGGTTCTAACTAATTGAATGCTGTTCAGAGTTTGGACTCCTTAAATTTGTGTCTTGACCTGAAAAGATCTCCATTGGTTTGTCTATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU343689 lncRNA upstream 1248 190901 ~ 191183 (+) True G302566
TU343683 lncRNA upstream 2530 189520 ~ 189901 (+) False G302565
TU343682 lncRNA upstream 2530 189664 ~ 189901 (+) True G302565
TU343680 lncRNA upstream 5227 186807 ~ 187204 (+) True G302563
TU343675 lncRNA upstream 8610 182798 ~ 183821 (+) False G302561
TU343702 lncRNA downstream 7993 205461 ~ 205690 (+) True G302579
TU343714 lncRNA downstream 42827 240295 ~ 240505 (+) True G302591
TU343715 lncRNA downstream 43573 241041 ~ 241271 (+) True G302592
TU343725 lncRNA downstream 55899 253367 ~ 253666 (+) True G302601
TU343727 lncRNA downstream 58662 256130 ~ 256648 (+) True G302603
CI01000091_00161029_00165225.mRNA mRNA upstream 26949 160989 ~ 165482 (+) True CI01000091_00161029_00165225
CI01000091_00120666_00139417.mRNA mRNA upstream 52646 120666 ~ 139785 (+) True CI01000091_00120666_00139417
CI01000091_00039550_00086927.mRNA mRNA upstream 104246 39232 ~ 88185 (+) True CI01000091_00039550_00086927
CI01000091_00247680_00252574.mRNA mRNA downstream 49453 246921 ~ 252729 (+) True CI01000091_00247680_00252574
CI01000091_00277114_00290224.mRNA mRNA downstream 79646 277114 ~ 290224 (+) True CI01000091_00277114_00290224
CI01000091_00309199_00325636.mRNA mRNA downstream 111500 308968 ~ 325871 (+) True CI01000091_00309199_00325636
CI01000091_00359388_00360200.mRNA mRNA downstream 161121 358589 ~ 360617 (+) True CI01000091_00359388_00360200
CI01000091_00366037_00366669.mRNA mRNA downstream 168569 366037 ~ 367204 (+) True CI01000091_00366037_00366669
TU343606 other upstream 130264 59635 ~ 62167 (+) True G302512
TU343815 other downstream 389444 586912 ~ 589526 (+) True G302679
TU343910 other downstream 758442 955910 ~ 957032 (+) True G302768
TU344339 other downstream 855155 1052623 ~ 1053014 (+) True G303132

Expression Profile