RNA id: CI01000091_00370016_00370645.mRNA



Basic Information


Item Value
RNA id CI01000091_00370016_00370645.mRNA
length 2065
RNA type mRNA
GC content 0.39
exon number 1
gene id CI01000091_00370016_00370645
representative True

Chromosome Information


Item Value
chromosome id CI01000091
NCBI id null
chromosome length 1322612
location 368980 ~ 371044 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATATATACAACAACAAACCTATTTAGCGACTTGCTTGCAGTGTCTTATTGTTTGCTAGCCTGTGAATGGAGATGATCTGGAAAAACATGTTTGTCCACTTTCTCCACTCATTCCAGTTGTTCTACTGGCAGAGATGTTGTAATGCTAATTGGCAAATGAATATATGTATGTTTCAACACAGAAGGTGAAATTTGTGAGTACTGTTGTGTTGTTGACTTTCTGTAAATCAAGCTTTCACTGAGGTTTTTTTTCTTTCTTTCTTTCTTTAAGAATCTGTAAAAAAAAAATGCCTCTCCACAGGGGAATGTCTTGACATTGAATATAGCTTTGGATTTTTATAAATTATCTTGTCAATAAATATATTTCTGGATTATTACAAATGATCTTAAGTTGTCATTTATACATTTATCATTAGTTGATTAATTGAAACTTGAGCAATAATCCTTTTTCGCCCAGCTGCCAACCAGTTAAAAATGAGAAAATATTATTAAATTAATTTTAAGAAAAGCGTTGATGCAATTGTATTGTGAATTCTACTTGGAAAGTACCAGGAACGCTGCCACGGAAGTGTAGTATTGTCAGTGTAGCATTGGTTTCGATTTTAATAGTAGTAAGAAAAGAAAGCTAACCAAAATATAATATTATCTGTATTCAAGAAGCCTTTAATTTGTCCTGCCATCAAAACATCTAGCTCTATTTTTAGCTTCATATTTTTTTGTTTTGAGTCTCAACAAGGCTTGTGATTGATACCTACCCAATCCTTTCGGTTGATGACTTGGCTCATTTGTATTTGTGTGACATGGTTATTGTTAAGTTCCTTGTTGATGCGCATCTCATCGAAACTAGCCGCTGTATCAACATTCCCTGCTGAGGAATCTGGTCAGGCTTGAAAATTCACCTTCAGGTCCTTCCAACTGGGCTCCTCCCTTCGCAGAAAATCTTAAAACTCTGAAGGTCAGGACCAGAAGTCATTTCTACGATTAAGAGAAGAGCGAACACTTTCAAGCAAACGAAGCCAAGCAAACGAGAAAAAAATGGTGTCTATGTGTCGACAGATCCTGGGCATGTCCCTAGGCATTATTGGTTTCATAGGAGCTATTGTGATTTGTGCCCTTCCTATGTGGAAGGTGACAGCATTCATTGGAGCCAATATCGTTACTGCGCAGACCATCTGGGAAGGCTTGTGGATGAACTGTGTGATACAAAGCACAGGACAAATGCAGTGCAAAATCTATGACTCCCTCTTGGCCTTACCTCAGGACTTGCAGGCGGCTCGGGCACTTGTGGTCATCGCCATCATTGTGTGCATCTTTGGGATCATCCTGGGAATTGCTGGAGGAAAATGTACCAGCTTTGTCGAGAGGGAAGACACAAAGGCAAAGGTGGCTATCGCTAGTGGTATAATCTTCATCGTTGCTGGAGTGTTGGTTCTGGTCCCCGTCTGTTGGTCAGCTAACACCATCATCAGGGATTTCTACAATCCCTTGCTCACAGATGCTCAAAGAAGGGAGATTGGGGCTTCTCTATATATTGGATGGGGTGCAGCTGCACTGCTGATCCTGGGAGGAGGTATACTGTGTAGCTCCTGCCCACCTAAGGACGACAACTACGGCATCAAGTACTCTCAGCCACGGTCTGTTGCCACCAGCAAAGCCTACGTCTGAAAGAGATCAAGCATACAAAGACTTTTTACTTGCAAAGACTTTTTTTCCTGTAAAACCTCTTTATTCCCACCTGCGGATTTTTTTTCTAAGGAGAAGTAGAAGGACAGTGTCTGATATGACAGTTTATTTACTGAGGTTTTGTGCTGTGATTATACAGATCACTGAAAGAGAAAAATGTGTATAATGTGATGAGAGGAATCAAACTCAGGGAAGCAGAGATCTGTTTTTTTTTTTTTATAAACAAGCCATTCTTGCAATTTATGTTTAATATGACAATAGGAATAGTTTCATTAATCAGATTTTATAAAATGTGTGTTAACCTTCTTATCATTATAAATTAGCATTTTTTGCACAAAGATGTCTTGATCATTAAATTTGTCTTACTATTTGTTTATTAAA

Function


GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06087 CLDN; claudin

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU343765 lncRNA upstream 22007 344248 ~ 346973 (+) True G302630
TU343771 lncRNA upstream 33890 334525 ~ 335090 (+) True G302636
TU343769 lncRNA upstream 35048 333688 ~ 333932 (+) True G302634
TU343766 lncRNA upstream 60828 307932 ~ 308152 (+) True G302631
TU343735 lncRNA upstream 99285 269406 ~ 269695 (+) True G302611
TU343788 lncRNA downstream 22642 393686 ~ 393891 (+) True G302653
TU343816 lncRNA downstream 220049 591093 ~ 591568 (+) True G302680
TU343824 lncRNA downstream 242170 613214 ~ 613703 (+) True G302688
TU343826 lncRNA downstream 244361 615405 ~ 615789 (+) True G302690
TU343832 lncRNA downstream 265480 636524 ~ 636744 (+) True G302696
CI01000091_00368135_00368878.mRNA mRNA upstream 41 368135 ~ 368939 (+) True CI01000091_00368135_00368878
CI01000091_00366037_00366669.mRNA mRNA upstream 1776 366037 ~ 367204 (+) True CI01000091_00366037_00366669
CI01000091_00359388_00360200.mRNA mRNA upstream 8363 358589 ~ 360617 (+) True CI01000091_00359388_00360200
CI01000091_00309199_00325636.mRNA mRNA upstream 43109 308968 ~ 325871 (+) True CI01000091_00309199_00325636
CI01000091_00277114_00290224.mRNA mRNA upstream 78756 277114 ~ 290224 (+) True CI01000091_00277114_00290224
CI01000091_00375689_00376318.mRNA mRNA downstream 4363 375407 ~ 376639 (+) True CI01000091_00375689_00376318
CI01000091_00382012_00384325.mRNA mRNA downstream 10731 381775 ~ 384589 (+) True CI01000091_00382012_00384325
CI01000091_00390010_00390965.mRNA mRNA downstream 18889 389933 ~ 391062 (+) True CI01000091_00390010_00390965
CI01000091_00438822_00455209.mRNA mRNA downstream 67778 438822 ~ 455353 (+) True CI01000091_00438822_00455209
CI01000091_00457499_00460775.mRNA mRNA downstream 86455 457499 ~ 462653 (+) True CI01000091_00457499_00460775
TU343606 other upstream 306813 59635 ~ 62167 (+) True G302512
TU343815 other downstream 215868 586912 ~ 589526 (+) True G302679
TU343910 other downstream 584866 955910 ~ 957032 (+) True G302768
TU344339 other downstream 681579 1052623 ~ 1053014 (+) True G303132

Expression Profile