RNA id: TCONS_00017897


Basic Information

Item Value
RNA id TCONS_00017897
length 3254
RNA type mRNA
GC content 0.45
exon number 4
gene id XLOC_009087
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 15445113 ~ 15449929 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATTTGGAAATCACTGCACATTGTTCACTTGCCATAAAGACGCCAGGAGGAGGAAACAGATGCACAAGGGGTATTCAAGTTCACTGGAGGAGGAAAGAGTTAATTAAATGACAGACCCCTCCCATTATTGACTGGCAATATATTAATAGGCAGTGTGAAAGAAGCCGGCAGTCGCTGGTCAGGACTCAGGAGAGCTTGCGGTGCTGTCTGACGCTCTGTGGTGCTGAAAGTGCCGCCCGCCGCGATGTGGTCCGTGTTTTTCGTTTTTCTGTCTTATCTAGACAGAAACTTTGTTAAAGGAGAGTTCTTGAGCCAGACTTTAGATGCCGAAAAGGAGAGCAAGGAGCTCTTTTACATGCTCAACAACACTCTTTGCGCCAAAAGTTCAGTTGTAGGAGAGTACCACCTCCATCAGGTCACCGATGGGGCAGAAGAGGTCCGCTCTGTGCATGACTCCGAGGGGCGCCTGCTCGACTGCTCAGTCATCCAAAACCAAATGCAGGTCAAATCCTTTATGCATGTCTGCAGACTTGGCCTAAGAAACCAAATGAGCTCCGACCTGAAGATGAGCTTGACTGGGGTGTCCGAAGCGAAGGCGAACTGTAACAAGCTGAGATCAAAAGGAGCCAAGAATGTGATACCGACGACAAAACAAGTGAAAGAGGCGAGCAACAAGAAGACGCGAACCAAGCGAGGCTTCACTTATCCTGGCACTCTTTGGTGTGGTGCTGGAAACATCGCAGATCATTATGAGCAGCTGGGCGAGTTCGAAGAGACTGACAGATGTTGCCGCGTTCACGATCACTGCCCATATGTCATCCATGCGTTCTCCTCCAACTATGGATATACCAACTTTAAATGGCACTCACTCAGCCATTGTGACTGCGACAATGCCTTAAAAGAATGCCTGAGGCTCGTCAATGACACCTCCTCCCGAGTGGTTGGACAAGCTTTCTTTAATGTGATCGAAGTGCCTTGCTTCGAGTTTTCATTTGAAGAGCAGTGTGTTGAGCGCCACTGGTATGGTGTGTGTAAAAAGTATGAAAGAGTTCCTGTTGCAGTGATTAAAGAATCAATCCCGTATGACTTCGGGGGTATTGATGTCATTGACGTACTGACTCTCGCTCCTCTCAAGGGAAAGCAGTCAGACAAAGAGATGCAGAACAAGACTGAAAGCACAACAGAGTCAACGTTCCCAAAGACCACGAGTCCCGAGGAGCCCTCGCTTACAAATGTGGTGACGGCCGCAGAGGATTTCATTAAAGTGCTCGCCACAGTCTCCACCTCTCAAAGCTCATCCACAGATGCAGGGAAAGGAGAAACTCAGACGtcagagaagaagaagaagaaaacctCTGGCAAAAAGAAAAAGGAGAACAAGAAGAAAAGGGGCAAGGGTAAAGGCAGGAAGAAGAATAAAAAACTTGATGCTGTGTTAAAAGTCGATGAAGGTGCGTCCGGTGCGACAAATCCAAATGAAGAAGTCATGGGTAAGAACAACTACATGGAGGAAACaccaaacacaaatcaattaagcgTAAAAGAAAACAATTTCATGAACAGCGAGCTAGACGCAGTAGGAAATGGGGCGCTTTCTAATAAGATGATGAGGGATGATCCTCAAAGGTCGAATGATAATCGGGATGCTGATCAATCCTTAGTGAAGACTGGTAAAGATCCAGAGATTCTTGAGTACAGGCAAGTAAATGACACTGAGTTGGTTTCTCCCTCACCTAGAGATCACATTACCCCCGCCAGCCGTGAAAAGAACAGAGCCAAGCTAAGACAAAGAGGCGGAaagaaaaagcaaagaaaaaacaaTCCTTCCACAGAAGTTTCCCAAGCTTATTTCAAAGAAGAAACACTTTCAGTAAGTGCGCCCGAAGGTGCTAGCCTTGCAACATCAACCACAGAGAGCCCCATTACACTGGAGGTGACACAAAGTACACAGTACACGGACGAAAAGGGACTAGTAGGAACACCTGTTAAATCCAAAACACCAAGGCAGAGAGAGGGAAGAAAGAGACAAAGGAAAGTCATTGCTTCCTCTAACGAAGAACTCCCTCGTGAATCTACCTCTGAAGACCCTCTATTGTCCACAAGCACTGTTGAACCGACTGACTTGCAAGAGAGACTGGGATTGGACAATCTTGAAAATGCACAACAGAGTTCGAAGGACATCAAGCGAGGGCGGCGTGTCATCAAAATCTGCTACGAAGCCGTTTTGCCTGATGTTGCAGACACGACACCCCTGCCGACACTAATCGAAAAGGACAATGAGTTTCAGTTAAAGGACCCGGAGGTACATACAGTGATTCCTAATCTACAGACTAACACTCCGTCCATGCCTCCCCGCAGACTTGGAAAGACCAAAGTGAAGAGAAGCAGAGAGAGAGGAGCAGGAGAAAAGCATGGAAAAGTTAAGAGAGAGTGAAGATCACCTCATCTTCTAGGACAGTGTTTCTCAAGcacgttcctggagggccaccaaCTCTGTATGTTTTGCATGCCTCCTTTCTCTGTCACACCTCTTAAAGGTTTTTCAGTCTCGACTACTGAGCTgaagatctgaatcaggtgtgtttggttaaggagacacagaaaatgtgcagagctggtggtcctccaggaacatggttggaaCATGGAACATGGTTGATCCGAAACACTGTCATCCGATATGATGtttttaataaactgcatgttttTATCTTCTGTTTTTATAGCTCTGCTGATGCTAAACTGACAAATCAGATCAATTCTTGAGAAGCATTTGTTTCTCGACATGATTGCCGAATAAAGTAAATATGAGCACTGGTGGTTCTCCTAAAGTGTGGTTTAAGAAAACATTCCTCCGCTACACAATAcgggttttgttttttaatagttttgaGTGTATTTCCAGGTAACCTGATTATTTGCCCTCCTTGAAAAAAAACGAACCCAAGTACCTGCAGAACATTTATGACAGTCTTTGTTCTAGAGCAGACTTTGTCCTTCCTAGGCCTGTGCCAATGGACTTAAGCAGAAAGGGTCACATTCTTCTCAAAGGATAATCTGGTTTAGGTGCCTCTCCCACCCTCCAACTTTAAATCAGTATTGAAATGCTGAACTCAAATCTCCCATCAGCTGATCCTCACATGCTCCTTTTGGAAAGTGAGCCAGAATTGTCTGCAGAGGACGATGTACATAATTAAAGTCGCAGTGTTACAGTGATGCAAGCTGGTTTCAGAtgttcattcgttttttttttt

Function

GO:

id name namespace
GO:0006644 phospholipid metabolic process biological_process
GO:0050482 arachidonic acid secretion biological_process
GO:0005576 extracellular region cellular_component
GO:0004623 phospholipase A2 activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110418-1 Predicted to enable phospholipase A2 activity. Predicted to act upstream of or within arachidonic acid secretion and phospholipid metabolic process. Predicted to be located in extracellular region. Orthologous to human PLA2G3 (phospholipase A2 group III) and PROCA1 (protein interacting with cyclin A1).

Ensembl:

ensembl_id ENSDART00000101918

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019136 lncRNA downstream 57691 15381488 ~ 15387422 (-) False XLOC_009086
TCONS_00019135 lncRNA downstream 58944 15381488 ~ 15386169 (-) False XLOC_009086
TCONS_00017895 lncRNA downstream 61102 15383894 ~ 15384011 (-) False XLOC_009086
TCONS_00019134 lncRNA downstream 69595 15374059 ~ 15375518 (-) True XLOC_009085
TCONS_00018817 lncRNA downstream 137362 15303727 ~ 15307751 (-) False XLOC_009083
TCONS_00017901 lncRNA upstream 12402 15462331 ~ 15469096 (-) True XLOC_009088
TCONS_00018818 lncRNA upstream 14013 15463942 ~ 15464189 (-) True XLOC_009089
TCONS_00018819 lncRNA upstream 15047 15464976 ~ 15465590 (-) True XLOC_009090
TCONS_00019137 lncRNA upstream 46172 15496101 ~ 15508393 (-) True XLOC_009091
TCONS_00018820 lncRNA upstream 219315 15669244 ~ 15675152 (-) True XLOC_009092
TCONS_00017894 mRNA downstream 87935 15348490 ~ 15357178 (-) True XLOC_009084
TCONS_00017889 mRNA downstream 214849 15221123 ~ 15230264 (-) False XLOC_009082
TCONS_00017890 mRNA downstream 217572 15221421 ~ 15227541 (-) False XLOC_009082
TCONS_00017887 mRNA downstream 560781 14875726 ~ 14884332 (-) True XLOC_009079
TCONS_00017886 mRNA downstream 664511 14776854 ~ 14780602 (-) True XLOC_009078
TCONS_00017898 mRNA upstream 10045 15459974 ~ 15469096 (-) False XLOC_009088
TCONS_00017899 mRNA upstream 10623 15460552 ~ 15468326 (-) False XLOC_009088
TCONS_00017900 mRNA upstream 10680 15460609 ~ 15469079 (-) False XLOC_009088
TCONS_00017911 mRNA upstream 435920 15885849 ~ 15983428 (-) False XLOC_009094
TCONS_00017912 mRNA upstream 436135 15886064 ~ 15983183 (-) False XLOC_009094
TCONS_00017896 other downstream 61130 15383898 ~ 15383983 (-) True XLOC_009086
TCONS_00017891 other downstream 220411 15221483 ~ 15224702 (-) False XLOC_009082
TCONS_00017882 other downstream 809328 14635669 ~ 14635785 (-) True XLOC_009076
TCONS_00017874 other downstream 1129643 14315354 ~ 14315470 (-) True XLOC_009071
TCONS_00017866 other downstream 1251217 14185388 ~ 14193896 (-) False XLOC_009066
TCONS_00017917 other upstream 509447 15959376 ~ 15960468 (-) True XLOC_009094
TCONS_00017936 other upstream 1344182 16794111 ~ 16872600 (-) True XLOC_009108
TCONS_00017944 other upstream 1611648 17061577 ~ 17071246 (-) False XLOC_009112
TCONS_00017972 other upstream 2533636 17983565 ~ 18002215 (-) False XLOC_009128
TCONS_00017973 other upstream 2570616 18020545 ~ 18023109 (-) True XLOC_009128

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000154_01271709_01275181.mRNA True 2504 mRNA 0.45 5 CI01000154 1271462 ~ 1275353 (+)