RNA id: TCONS_00001462


Basic Information

Item Value
RNA id TCONS_00001462
length 1071
RNA type mRNA
GC content 0.55
exon number 6
gene id XLOC_000918
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 474085 ~ 494280 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGTATATAGAAAGCCATgagctGCTGCGTTTGTTCGGTGTGCCGTTTATTGTGGCGCCGATGGAGGCTGAAGCTCAGTGCGCCGCTCTGGACCGATTGGACCAAACGCACGGCACCATCACAGACGACAGCGATATCTGGCTGTTCGGCGGACGCCATGTATACAGGAACTTCTTCAACCAGAACAAATACGTGGAGCATTATCAGATTGTGGACATGCAGAACCAGCTGGGTCTGGACAGAAGTAAACTCATCAATCTGGCGTATCTGCTGGGGAGTGATTACACCGAGGGCATTCCTGGAGTGGGATACGTCACTGGGATGGAGATCCTCAATGAGTTTCCTGGAGCCGGTCTGGAGCCGCTCGTCCAGCTCAGtgaATGGTGGACTGAAGCGCAGGAGAATAAGAAACTCTCCGTCAATCCCAAAGACACGAAAGTGAAGAAGAAACTGAGGAACCTGCAGATTCATCCCGGTTTCCCGAACCCGGCCGTGGCTCAGGCGTACCTGCAGCCTAGTGTCGACCAATCAGATGCCTCCTTCAGCTGGGGCCGCCCACATCTGGATCTCATCAAAGAATATCCTTCTCCAAAACCTAGCCGCTTCGGGTGGAGCAGTCGGAAGACGGAGGAGACGCTGCAGCCGGTGCTCAAACAGCTCCAATCACAACAGacgcAGCTGCGCATCGACTCCTTTTTCCGGCTGGAGCAGCAGGATCGTCAGCAGATCCGCAGTGAGCGTCTGCGCAGAGCCGTCATCTGCATGAAGAGGAAGGAGagagaagaggaagaagaggacGAGTCAGTGTCTGCACAGAAACAGGGGCGGAGCGAAGCCGACGAGGCCCCGGGGCCGCTAGCTGGAGGATTCATCAGCTCAGACCCTCAGACCAGCACACAGGGGGGTGGAGCCAAGCAGATCAGGGCGGAGTCGAGCAGCTCCAGCTCAGAGGAGGAGGCGGAGTCCGGGAAGGGTGTCGCTATGGTTACCGCTCGATCTGTGTTTGAGGGGAAAACAAGAGGAAGAGGGAAAAAACTGTtaagaggaagaggaagaagcaaaaacagatga

Function

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0006289 nucleotide-excision repair biological_process
GO:0006295 nucleotide-excision repair, DNA incision, 3'-to lesion biological_process
GO:0005634 nucleus cellular_component
GO:0004518 nuclease activity molecular_function
GO:0004519 endonuclease activity molecular_function
GO:0004520 endodeoxyribonuclease activity molecular_function
GO:0016788 hydrolase activity, acting on ester bonds molecular_function
GO:0003677 DNA binding molecular_function
GO:0003697 single-stranded DNA binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko03420 Nucleotide excision repair
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-050327-28 Predicted to enable endodeoxyribonuclease activity and single-stranded DNA binding activity. Predicted to be involved in nucleotide-excision repair, DNA incision, 3'-to lesion. Predicted to act upstream of or within nucleotide-excision repair. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in cerebrooculofacioskeletal syndrome 3; melanoma; and xeroderma pigmentosum group G. Orthologous to human ERCC5 (ERCC excision repair 5, endonuclease).

Ensembl:

ensembl_id ENSDART00000192494

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001454 lncRNA downstream 128392 343617 ~ 345895 (-) False XLOC_000914
TCONS_00002896 lncRNA downstream 263474 209129 ~ 210813 (-) True XLOC_000912
TCONS_00002895 lncRNA downstream 273093 199526 ~ 201194 (-) False XLOC_000910
TCONS_00002894 lncRNA downstream 282302 189734 ~ 191985 (-) True XLOC_000911
TCONS_00001446 lncRNA downstream 316754 155770 ~ 157533 (-) True XLOC_000909
TCONS_00001467 lncRNA upstream 29930 511771 ~ 513717 (-) True XLOC_000919
TCONS_00001475 lncRNA upstream 139149 620990 ~ 622179 (-) False XLOC_000923
TCONS_00003289 lncRNA upstream 296734 778575 ~ 779614 (-) True XLOC_000927
TCONS_00003290 lncRNA upstream 524096 1005937 ~ 1014866 (-) True XLOC_000929
TCONS_00002897 lncRNA upstream 662121 1143962 ~ 1253194 (-) True XLOC_000931
TCONS_00001459 mRNA downstream 2362 466780 ~ 471925 (-) False XLOC_000917
TCONS_00001458 mRNA downstream 3475 466780 ~ 470812 (-) False XLOC_000917
TCONS_00001457 mRNA downstream 12122 454315 ~ 462165 (-) True XLOC_000916
TCONS_00001456 mRNA downstream 62956 357518 ~ 411331 (-) True XLOC_000915
TCONS_00001455 mRNA downstream 120172 350840 ~ 354115 (-) True XLOC_000914
TCONS_00001464 mRNA upstream 5348 487189 ~ 493218 (-) True XLOC_000918
TCONS_00001465 mRNA upstream 27044 508885 ~ 513786 (-) False XLOC_000919
TCONS_00001466 mRNA upstream 27231 509072 ~ 513762 (-) False XLOC_000919
TCONS_00001468 mRNA upstream 37012 518853 ~ 524433 (-) True XLOC_000920
TCONS_00001469 mRNA upstream 70434 552275 ~ 558260 (-) True XLOC_000921
TCONS_00001460 other downstream 2362 467743 ~ 471925 (-) True XLOC_000917
TCONS_00001442 other downstream 320441 153238 ~ 153846 (-) False XLOC_000909
TCONS_00001429 other downstream 424452 47954 ~ 49835 (-) False XLOC_000904
TCONS_00001421 other downstream 429741 42204 ~ 44546 (-) False XLOC_000903
TCONS_00001476 other upstream 139184 621025 ~ 625080 (-) False XLOC_000923
TCONS_00001485 other upstream 569100 1050941 ~ 1051057 (-) True XLOC_000930
TCONS_00001486 other upstream 831764 1313605 ~ 1315753 (-) True XLOC_000932
TCONS_00001492 other upstream 1389020 1870861 ~ 1875118 (-) False XLOC_000939
TCONS_00001493 other upstream 1392167 1874008 ~ 1885600 (-) False XLOC_000939

Expression Profile

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