RNA id: TU465852


Basic Information

Item Value
RNA id TU465852
length 246
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G405364
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 2652908 ~ 2653153 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTGGTCTGGACCAAGAAAGAAAGAAAGAAAATGAAAAAAAAAAAAAAAAAACACAGTCCATTTATTATATATTCACCCGCCAACCTGGTCAAAAAAAGCATGGGCTAGTTTTGGACTAGTTTTGAGCAGCAATTAGGCGGGTTTTGTTGTGAAAACCTGGCGACCCTGGTCATTCCTATGATTTTGTGCTCACATCCAAAGTGTGGCACACAAAGCCGCCTCTCAGTGCTTAATTGAGTTCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU465850 lncRNA upstream 8055 2644549 ~ 2644853 (+) True G405362
TU465849 lncRNA upstream 8449 2644092 ~ 2644459 (+) True G405361
TU465839 lncRNA upstream 19175 2633389 ~ 2633733 (+) True G405352
TU465826 lncRNA upstream 19279 2633389 ~ 2633629 (+) False G405352
TU465823 lncRNA upstream 21246 2631460 ~ 2631662 (+) True G405351
TU465853 lncRNA downstream 253 2653406 ~ 2653616 (+) True G405365
TU465854 lncRNA downstream 2027 2655180 ~ 2655413 (+) True G405366
TU465801 lncRNA downstream 6201 2659354 ~ 2715141 (+) True G405329
TU465873 lncRNA downstream 67709 2720862 ~ 2721324 (+) True G405385
TU465878 lncRNA downstream 77120 2730273 ~ 2730509 (+) True G405390
CI01000299_02612562_02613926.mRNA mRNA upstream 38116 2612499 ~ 2614792 (+) True CI01000299_02612562_02613926
CI01000299_02195854_02198465.mRNA mRNA upstream 453983 2195798 ~ 2198925 (+) True CI01000299_02195854_02198465
CI01000299_02118245_02120332.mRNA mRNA upstream 531050 2116861 ~ 2121858 (+) True CI01000299_02118245_02120332
CI01000299_01855614_01858092.mRNA mRNA upstream 794205 1855614 ~ 1858703 (+) True CI01000299_01855614_01858092
CI01000299_01197545_01215711.mRNA mRNA upstream 1436919 1197422 ~ 1215989 (+) False CI01000299_01197545_01215711
CI01000299_02696797_02704180.mRNA mRNA downstream 43479 2696632 ~ 2704220 (+) True CI01000299_02696797_02704180
CI01000299_02706136_02711943.mRNA mRNA downstream 52720 2705873 ~ 2713740 (+) True CI01000299_02706136_02711943
CI01000299_02753238_02760499.mRNA mRNA downstream 100085 2753238 ~ 2760953 (+) True CI01000299_02753238_02760499
CI01000299_02813216_02818668.mRNA mRNA downstream 159988 2813141 ~ 2819096 (+) True CI01000299_02813216_02818668
CI01000299_03144958_03149338.mRNA mRNA downstream 491237 3144390 ~ 3149340 (+) True CI01000299_03144958_03149338
TU464370 other upstream 2046558 604870 ~ 606350 (+) True G403972
TU463930 other upstream 2242120 364139 ~ 410788 (+) True G403609
TU463894 other upstream 2580637 35462 ~ 72271 (+) True G403578
TU466101 other downstream 501444 3154597 ~ 3155174 (+) True G405609
TU466041 other downstream 1478105 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466350 other downstream 1642380 4295533 ~ 4320141 (+) True G405842
TU466383 other downstream 1836665 4505404 ~ 4505917 (+) True G405866
TU466374 other downstream 2049229 4702382 ~ 4702508 (+) True G405864

Expression Profile