RNA id: CI01000299_02195854_02198465.mRNA



Basic Information


Item Value
RNA id CI01000299_02195854_02198465.mRNA
length 753
RNA type mRNA
GC content 0.33
exon number 3
gene id CI01000299_02195854_02198465
representative True

Chromosome Information


Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 2195798 ~ 2198925 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATATAAAAATTTATGTATTTGTGAGCTGCGTGATATGCAAATATTCTATCCAGCCAATGAGCGAAGCTGGAGCCATTTTGAAGCGTGATGTGGTGAAGACAGCGAGTACTCTGTCAGTCCAATGCTGTCTGCGGAAATACACAGAGAAGTTGATTCAGTGTTTAATGGTGTACATCTCTGACAATGCTGATAATCTCATCAGGCATTACCAGGATAGCCATGGTGACCTAAAGGAACTGGAACAGCACACACTGAGGATTATCACAAAGGTGGCTTCATGGACGATCCTTTAGAGACTGTAACTTTCTTTTGGTCAAATTGTCACTTTTTTCAGAAGTACTACAGTCATGATTTTTGGTTTTAGACTATTTAAGTTGCTGTTTCCAGAGTAGTATTGCAATCTCTGTCAGAAAACCTAAAATGCTTTATTTTTGTACTGATTTTACTAATTGTGTGAAAACCTTTTGTTGAAATGCTGTCCAAAAATTAGGTAAAATGCTTGTTTTGTGTTTATTGTATGTTTTGTACTTATTTTAAGACATTGAATGTTCTAGAGCAGTACAGTAAGTTTTATTCAATAGCTCAAGGTCTAAAATTAATTAAAATTTTAAGTTTGTTCAACTTAGTTTACTGTCTTTTTTAATGTAAATTAGCTTAAATGTTAAGTTAACACAACTTGCTATTACTTGGTAAATTCAACTTGTGTTTTTAAGTAAAGAATGTTGAGTAAACAAATATATTTAAGTACCTATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU465557 lncRNA upstream 87845 2107716 ~ 2107953 (+) True G405099
TU465553 lncRNA upstream 106266 2089207 ~ 2089532 (+) True G405095
TU465546 lncRNA upstream 114288 2081250 ~ 2081510 (+) True G405088
TU465522 lncRNA upstream 165831 2029613 ~ 2029967 (+) True G405066
TU465515 lncRNA upstream 170805 2024788 ~ 2024993 (+) True G405059
TU465768 lncRNA downstream 332408 2531333 ~ 2531597 (+) True G405297
TU465785 lncRNA downstream 379163 2578088 ~ 2578375 (+) True G405314
TU465804 lncRNA downstream 392502 2591427 ~ 2591654 (+) True G405332
TU465815 lncRNA downstream 423027 2621952 ~ 2622265 (+) True G405343
TU465817 lncRNA downstream 427103 2626028 ~ 2626240 (+) True G405345
CI01000299_02118245_02120332.mRNA mRNA upstream 73940 2116861 ~ 2121858 (+) True CI01000299_02118245_02120332
CI01000299_01855614_01858092.mRNA mRNA upstream 337095 1855614 ~ 1858703 (+) True CI01000299_01855614_01858092
CI01000299_01197545_01215711.mRNA mRNA upstream 979809 1197422 ~ 1215989 (+) False CI01000299_01197545_01215711
CI01000299_01139684_01147241.mRNA mRNA upstream 1048550 1139497 ~ 1147248 (+) True CI01000299_01139684_01147241
CI01000299_01049508_01055558.mRNA mRNA upstream 1140062 1049390 ~ 1055736 (+) True CI01000299_01049508_01055558
CI01000299_02612562_02613926.mRNA mRNA downstream 413574 2612499 ~ 2614792 (+) True CI01000299_02612562_02613926
CI01000299_02696797_02704180.mRNA mRNA downstream 497707 2696632 ~ 2704220 (+) True CI01000299_02696797_02704180
CI01000299_02706136_02711943.mRNA mRNA downstream 506948 2705873 ~ 2713740 (+) True CI01000299_02706136_02711943
CI01000299_02753238_02760499.mRNA mRNA downstream 554313 2753238 ~ 2760953 (+) True CI01000299_02753238_02760499
CI01000299_02813216_02818668.mRNA mRNA downstream 614216 2813141 ~ 2819096 (+) True CI01000299_02813216_02818668
TU464370 other upstream 1589448 604870 ~ 606350 (+) True G403972
TU463930 other upstream 1785010 364139 ~ 410788 (+) True G403609
TU463894 other upstream 2123527 35462 ~ 72271 (+) True G403578
TU466101 other downstream 955672 3154597 ~ 3155174 (+) True G405609
TU466041 other downstream 1932333 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466350 other downstream 2096608 4295533 ~ 4320141 (+) True G405842
TU466383 other downstream 2290893 4505404 ~ 4505917 (+) True G405866
TU466374 other downstream 2503457 4702382 ~ 4702508 (+) True G405864

Expression Profile