RNA id: CI01000299_01139684_01147241.mRNA



Basic Information


Item Value
RNA id CI01000299_01139684_01147241.mRNA
length 971
RNA type mRNA
GC content 0.43
exon number 5
gene id CI01000299_01139684_01147241
representative True

Chromosome Information


Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 1139497 ~ 1147248 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTATAAAAAGGCAAAATTTGATATGCATGAGCATGACACATAAGTCCAGTTCTCTCTTTCAGATTCGTGGGCCAAAAAAGGTTGAGAACTAGAGGCCGCCTACAAGATTTGATCATGAACAAATCACCTCAAAAGTTCTCCCACTACTTTCTGCTTTAGATATTTTACTCATTTGACCGAGGGAATAATGAGGACTATTCAAATGAATCTCTTCATCACACTGGAGCCAATTAAAGTGGTTAATCGGGGGCCGACGACTGCCAAATTAAAGGAGATTGCAAATGTTAAACAGTATGATTGGAAATGTGCTGCCGGAGGAAAAATCCAGAGGATTTTCAATTTGAAAATCCAGTTTGGTCTGCCTTTCTACTGTGAGCATGATGCAAGATTCTGCAACGTTCCTGGCAATATCACCTGGAGAACTGAAGAGCGACAGGATGTGTCTTCCTCACTGGCAGGCGCAAGACAAATGATGCTTTTCCCTTTCGCGTCACCTCAGTGCCACTATACCATCTCCTCTGCATTGAAAACATTTTTTGTTACCCTTCACTTGGTGAATGTAATTGAGAAGCAGCCACGATGCAGTCGTGTCTCCAAATCGGAGTCTATTTCACTGGGCTTGCAATTTACGGTCCTTCGAGAGAAGATACCTTTATCAATATCCTATCCTCTGTATTCAGTGCCTTTTTTCGTATACACACCCTTCTGTAAAATCAAAGGAAACCGACTTTTAGCTGTTGCACTAAATTCTTCTAGTGTTTGCTGTGATCCTGCATGCAGCTTTAATCAGGACACCGTTGATGCACAGATCTTCCCTCCGCTGTCTTTAGGGATTTGTCCCCAGGCCCGGTTTGAAGGAGTGACCAAGAGACAGCTCATTTATCTCCCGACAAAAGAAAGCCATCTCACATTCACCCCAGCCCAAATAAAATCCCCCTTAGGCTGGAATTACATATTGATTTGATATAATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU464484 lncRNA upstream 12053 1125740 ~ 1127444 (+) True G404075
TU464483 lncRNA upstream 14223 1123579 ~ 1125274 (+) True G404074
TU464546 lncRNA upstream 63604 1070608 ~ 1075893 (+) False G404137
TU464547 lncRNA upstream 63728 1070608 ~ 1075769 (+) True G404137
TU464416 lncRNA upstream 489683 649415 ~ 649814 (+) True G404016
TU464844 lncRNA downstream 48229 1195477 ~ 1195736 (+) True G404424
TU464803 lncRNA downstream 50702 1197950 ~ 1198350 (+) True CI01000299_01197545_01215711
TU464856 lncRNA downstream 64407 1211655 ~ 1211871 (+) True G404436
TU464976 lncRNA downstream 169028 1316276 ~ 1316603 (+) True G404544
TU465036 lncRNA downstream 256509 1403757 ~ 1404012 (+) True G404603
CI01000299_01049508_01055558.mRNA mRNA upstream 83761 1049390 ~ 1055736 (+) True CI01000299_01049508_01055558
CI01000299_01036243_01046776.mRNA mRNA upstream 91894 1035037 ~ 1047603 (+) True CI01000299_01036243_01046776
CI01000299_00862803_00911972.mRNA mRNA upstream 227525 862803 ~ 911972 (+) True CI01000299_00862803_00911972
CI01000299_00826470_00828773.mRNA mRNA upstream 310537 826433 ~ 828960 (+) True CI01000299_00826470_00828773
CI01000299_00795673_00796901.mRNA mRNA upstream 342340 795673 ~ 797157 (+) True CI01000299_00795673_00796901
CI01000299_01197545_01215711.mRNA mRNA downstream 50174 1197422 ~ 1215989 (+) False CI01000299_01197545_01215711
CI01000299_01855614_01858092.mRNA mRNA downstream 708366 1855614 ~ 1858703 (+) True CI01000299_01855614_01858092
CI01000299_02118245_02120332.mRNA mRNA downstream 969613 2116861 ~ 2121858 (+) True CI01000299_02118245_02120332
CI01000299_02195854_02198465.mRNA mRNA downstream 1048550 2195798 ~ 2198925 (+) True CI01000299_02195854_02198465
CI01000299_02612562_02613926.mRNA mRNA downstream 1465251 2612499 ~ 2614792 (+) True CI01000299_02612562_02613926
TU464370 other upstream 533147 604870 ~ 606350 (+) True G403972
TU463930 other upstream 728709 364139 ~ 410788 (+) True G403609
TU463894 other upstream 1067226 35462 ~ 72271 (+) True G403578
TU466101 other downstream 2007349 3154597 ~ 3155174 (+) True G405609
TU466041 other downstream 2984010 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466350 other downstream 3148285 4295533 ~ 4320141 (+) True G405842
TU466383 other downstream 3342570 4505404 ~ 4505917 (+) True G405866
TU466374 other downstream 3555134 4702382 ~ 4702508 (+) True G405864

Expression Profile