RNA id: TU464547


Basic Information

Item Value
RNA id TU464547
length 460
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G404137
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 1070608 ~ 1075893 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCCCCCCAAATCATTATTGACTTCAGAAACTTCACACTAGACTTCAAGCAGCTTGGATTCTGTGCCTCTCCAGTCTTCCTTCAGACTCTGGGACCATGATTTCAACATGAAATGCAAAATTTACTTTTATCTGAAAAGAGGACTTTCGACCACTGTTCACTGTCCAGTTCTTTTTCTCCTTAGCCCAGGTAAGATGCTTCTGACGTTGTCTCTGGTTCAGAAGTGGCTTGGTAGTCCTTTTCCTGAAGATGTCTGAGTGTGGTGACTCTTGATGCGCTGACTCCGGCTTCATTCTACTCAATGTGAAGCTCTCCCAAGTGTTTGAATCGGCTTTACTTGACAGTATTCTCAAGCTTGCGGTCATCCCTGTTGCTTGTGCACCTTTGCCTACCCAATTTCTTCCTTCCAGTCAACTTTGCATTTAATATGCTTTGATACATCACTCTGTAAACAGCCACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464416 lncRNA upstream 420794 649415 ~ 649814 (+) True G404016
TU464369 lncRNA upstream 467025 602832 ~ 603583 (+) True G403971
TU464363 lncRNA upstream 487485 582756 ~ 583123 (+) True G403965
TU464350 lncRNA upstream 519866 550501 ~ 550742 (+) True G403952
TU463914 lncRNA upstream 907813 60419 ~ 162795 (+) True G403595
TU464483 lncRNA downstream 47810 1123579 ~ 1125274 (+) True G404074
TU464484 lncRNA downstream 49971 1125740 ~ 1127444 (+) True G404075
TU464805 lncRNA downstream 65587 1141356 ~ 1141636 (+) True G404385
TU464844 lncRNA downstream 119708 1195477 ~ 1195736 (+) True G404424
TU464803 lncRNA downstream 122181 1197950 ~ 1198350 (+) True CI01000299_01197545_01215711
CI01000299_01049508_01055558.mRNA mRNA upstream 14872 1049390 ~ 1055736 (+) True CI01000299_01049508_01055558
CI01000299_01036243_01046776.mRNA mRNA upstream 23005 1035037 ~ 1047603 (+) True CI01000299_01036243_01046776
CI01000299_00862803_00911972.mRNA mRNA upstream 158636 862803 ~ 911972 (+) True CI01000299_00862803_00911972
CI01000299_00826470_00828773.mRNA mRNA upstream 241648 826433 ~ 828960 (+) True CI01000299_00826470_00828773
CI01000299_00795673_00796901.mRNA mRNA upstream 273451 795673 ~ 797157 (+) True CI01000299_00795673_00796901
CI01000299_01139684_01147241.mRNA mRNA downstream 63728 1139497 ~ 1147248 (+) True CI01000299_01139684_01147241
CI01000299_01197545_01215711.mRNA mRNA downstream 121653 1197422 ~ 1215989 (+) False CI01000299_01197545_01215711
CI01000299_01855614_01858092.mRNA mRNA downstream 779845 1855614 ~ 1858703 (+) True CI01000299_01855614_01858092
CI01000299_02118245_02120332.mRNA mRNA downstream 1041092 2116861 ~ 2121858 (+) True CI01000299_02118245_02120332
CI01000299_02195854_02198465.mRNA mRNA downstream 1120029 2195798 ~ 2198925 (+) True CI01000299_02195854_02198465
TU464370 other upstream 464258 604870 ~ 606350 (+) True G403972
TU463930 other upstream 659820 364139 ~ 410788 (+) True G403609
TU463894 other upstream 998337 35462 ~ 72271 (+) True G403578
TU466101 other downstream 2078828 3154597 ~ 3155174 (+) True G405609
TU466041 other downstream 3055489 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466350 other downstream 3219764 4295533 ~ 4320141 (+) True G405842
TU466383 other downstream 3414049 4505404 ~ 4505917 (+) True G405866
TU466374 other downstream 3626613 4702382 ~ 4702508 (+) True G405864

Expression Profile