RNA id: TU464483


Basic Information

Item Value
RNA id TU464483
length 1455
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G404074
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 1123579 ~ 1125274 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAGCCATCTATTGGACAAATACTGAAACTAGTTTGAGTTGGCATTGAGTTAATATTATAAAAATAATAAAACAAATATGAACAGTACTCACGTGCTTCCTAAAGTATAGGCTAGGCTACTTTAATCAGGGAAAACGTCATACCTCATTGCAGATAAGGGGATATGTTAATGATAATCTTAAAATTCATTTCATTGTGATTATGCTATACTGTTGCGTCACACAATCATACAGACAATACTCATCAGATCAGGCATATTTAAAGGCTTTAAAAACTTACAGATCTGCTGCACTTCCCTATGGACAGACCTCAAATTCATTTCAAACTCATAAGGAGAACATGTTCTCTATTTAAAGTGAAGGAACTGTTTATCTCTACAGTGGGCAACACAAAACCAACCTACATACCACTACACAGGAGCTGGACACCATGGTAATGTTCCATTCATAAGAACATCAGCTAAAAATACACAGTAAAAATGATGTCTACTTTAACTAGATGCCATGTATTTCTCAACCCAAAAACATGAAATGCATCTCATACACAATTCTTCCAATAACCTCAAATTAGTAAAATTTATTTATATATGCACCCACCAACAAAAAGGCATTTAGACCACCCCTCTGCATTAAGCATGTTTGCTAAGAGGGATGCTAGGTAACTTAGCTTACTCTGCATTTTTATAATTGGATTTGACAAATCGAATGAACAGCTGATAGACAGTGTTGAATTTATCTGTTCATGTTGGTCCAGTAAAAGCCAAGTCAATACCAACCCCCTCACATCAAAGATTTATGGTTAATTACTAGCCCAGAAGTTACACCTTAATGTCTTGCATGCTGTAAAAGTGAGAAGTTAGTGAAAACATGACAGAAACAAAAACACAGCCACACAATGCACCTCTTTATCTTTTTATTTATAAAAAAAAAAAAAAAAGTCATTTAAAATTACATTTGATGTCAAACAAGTCATTATAAAAATAACTTCAAAATGTACAATTGCATCTTTCTGGGGGATATATATAATATATATATATAGCAATGATGGAACTTCCAACAAAAACATACTTGTGGGGTACAATCTCCACAATCCTCTACAGGCCGGGACAAGTGCAATACCTTCCAAACACACAGCATTGCTACCAATCCCAACCTGTGCAGAAAGGGACCAAACGGCTCCAAAGTGGTTCTCAGATGTGTGCTGCCACTGTCAGTTTTGCATGGATTTGCACAGCACACAGTCTTAAAAGCTGAATGCAAACCAGCAAAACTGACCGGGGTCCAGCAATGTTACAGTGTATGGAGACCCTGGGAGAGTTTGCGGAAGTCTTCGGATCCCAGATGCATTTAGCTAGAAGTACTTCAAGTGCTCACACTGCAGTAGATGACAGAAATACTACCTGCACTATAAGCACTTTAGCACTGCTGAAACTATCACAATGACAGCATTGGCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464546 lncRNA upstream 47686 1070608 ~ 1075893 (+) False G404137
TU464547 lncRNA upstream 47810 1070608 ~ 1075769 (+) True G404137
TU464416 lncRNA upstream 473765 649415 ~ 649814 (+) True G404016
TU464369 lncRNA upstream 519996 602832 ~ 603583 (+) True G403971
TU464363 lncRNA upstream 540456 582756 ~ 583123 (+) True G403965
TU464484 lncRNA downstream 466 1125740 ~ 1127444 (+) True G404075
TU464805 lncRNA downstream 16082 1141356 ~ 1141636 (+) True G404385
TU464844 lncRNA downstream 70203 1195477 ~ 1195736 (+) True G404424
TU464803 lncRNA downstream 72676 1197950 ~ 1198350 (+) True CI01000299_01197545_01215711
TU464856 lncRNA downstream 86381 1211655 ~ 1211871 (+) True G404436
CI01000299_01049508_01055558.mRNA mRNA upstream 67843 1049390 ~ 1055736 (+) True CI01000299_01049508_01055558
CI01000299_01036243_01046776.mRNA mRNA upstream 75976 1035037 ~ 1047603 (+) True CI01000299_01036243_01046776
CI01000299_00862803_00911972.mRNA mRNA upstream 211607 862803 ~ 911972 (+) True CI01000299_00862803_00911972
CI01000299_00826470_00828773.mRNA mRNA upstream 294619 826433 ~ 828960 (+) True CI01000299_00826470_00828773
CI01000299_00795673_00796901.mRNA mRNA upstream 326422 795673 ~ 797157 (+) True CI01000299_00795673_00796901
CI01000299_01139684_01147241.mRNA mRNA downstream 14223 1139497 ~ 1147248 (+) True CI01000299_01139684_01147241
CI01000299_01197545_01215711.mRNA mRNA downstream 72148 1197422 ~ 1215989 (+) False CI01000299_01197545_01215711
CI01000299_01855614_01858092.mRNA mRNA downstream 730340 1855614 ~ 1858703 (+) True CI01000299_01855614_01858092
CI01000299_02118245_02120332.mRNA mRNA downstream 991587 2116861 ~ 2121858 (+) True CI01000299_02118245_02120332
CI01000299_02195854_02198465.mRNA mRNA downstream 1070524 2195798 ~ 2198925 (+) True CI01000299_02195854_02198465
TU464370 other upstream 517229 604870 ~ 606350 (+) True G403972
TU463930 other upstream 712791 364139 ~ 410788 (+) True G403609
TU463894 other upstream 1051308 35462 ~ 72271 (+) True G403578
TU466101 other downstream 2029323 3154597 ~ 3155174 (+) True G405609
TU466041 other downstream 3005984 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466350 other downstream 3170259 4295533 ~ 4320141 (+) True G405842
TU466383 other downstream 3364544 4505404 ~ 4505917 (+) True G405866
TU466374 other downstream 3577108 4702382 ~ 4702508 (+) True G405864

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00003306 False 1893 lncRNA 0.40 2 NC_007112.7 3296607 ~ 3299853 (-)
rainbow trout (Oncorhynchus mykiss) TU1088 False 1658 lncRNA 0.41 2 NC_048565.1 2098487 ~ 2101039 (+)
bowfin (Amia calva) TU1088 True 909 lncRNA 0.49 1 CM030121.1 5557607 ~ 5558515 (+)
tiger barb (Puntius tetrazona) TU1088 True 254 lncRNA 0.42 1 NC_056699.1 3285956 ~ 3286209 (-)
mexican tetra (Astyanax mexicanus) TU1088 False 344 lncRNA 0.45 3 NC_035897.1 2524987 ~ 2526196 (-)