RNA id: TU465785


Basic Information

Item Value
RNA id TU465785
length 288
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G405314
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 2578088 ~ 2578375 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGTGGCCTAATGGTTAGAGAGTTGGACTTGTAACCTGAAGGTCACAAGTTCGAGTCTCAGTACCAGCAGAAAATGTAGGTGGGGGGAGTGAATGAACAGCGCTCTCTTCCACTCTCATTACCCACAACTGAGGTGCCCTTGAGCAAGGCACTTAACCCCCAATCACTCCCCGGGCATCGCAACAAAACTTGGATGGGTGAAAAGGAGCACAAATTCAGAGTGTGGGACACCATACTTGGCTACACTTTTAGAGGAGAAGATGAGGGGCTGAAGAGAACCAGCGAAGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU465768 lncRNA upstream 46491 2531333 ~ 2531597 (+) True G405297
TU465557 lncRNA upstream 470135 2107716 ~ 2107953 (+) True G405099
TU465553 lncRNA upstream 488556 2089207 ~ 2089532 (+) True G405095
TU465546 lncRNA upstream 496578 2081250 ~ 2081510 (+) True G405088
TU465522 lncRNA upstream 548121 2029613 ~ 2029967 (+) True G405066
TU465804 lncRNA downstream 13052 2591427 ~ 2591654 (+) True G405332
TU465815 lncRNA downstream 43577 2621952 ~ 2622265 (+) True G405343
TU465817 lncRNA downstream 47653 2626028 ~ 2626240 (+) True G405345
TU465819 lncRNA downstream 49197 2627572 ~ 2627835 (+) True G405347
TU465821 lncRNA downstream 50954 2629329 ~ 2629617 (+) True G405349
CI01000299_02195854_02198465.mRNA mRNA upstream 379163 2195798 ~ 2198925 (+) True CI01000299_02195854_02198465
CI01000299_02118245_02120332.mRNA mRNA upstream 456230 2116861 ~ 2121858 (+) True CI01000299_02118245_02120332
CI01000299_01855614_01858092.mRNA mRNA upstream 719385 1855614 ~ 1858703 (+) True CI01000299_01855614_01858092
CI01000299_01197545_01215711.mRNA mRNA upstream 1362099 1197422 ~ 1215989 (+) False CI01000299_01197545_01215711
CI01000299_01139684_01147241.mRNA mRNA upstream 1430840 1139497 ~ 1147248 (+) True CI01000299_01139684_01147241
CI01000299_02612562_02613926.mRNA mRNA downstream 34124 2612499 ~ 2614792 (+) True CI01000299_02612562_02613926
CI01000299_02696797_02704180.mRNA mRNA downstream 118257 2696632 ~ 2704220 (+) True CI01000299_02696797_02704180
CI01000299_02706136_02711943.mRNA mRNA downstream 127498 2705873 ~ 2713740 (+) True CI01000299_02706136_02711943
CI01000299_02753238_02760499.mRNA mRNA downstream 174863 2753238 ~ 2760953 (+) True CI01000299_02753238_02760499
CI01000299_02813216_02818668.mRNA mRNA downstream 234766 2813141 ~ 2819096 (+) True CI01000299_02813216_02818668
TU464370 other upstream 1971738 604870 ~ 606350 (+) True G403972
TU463930 other upstream 2167300 364139 ~ 410788 (+) True G403609
TU463894 other upstream 2505817 35462 ~ 72271 (+) True G403578
TU466101 other downstream 576222 3154597 ~ 3155174 (+) True G405609
TU466041 other downstream 1552883 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466350 other downstream 1717158 4295533 ~ 4320141 (+) True G405842
TU466383 other downstream 1911443 4505404 ~ 4505917 (+) True G405866
TU466374 other downstream 2124007 4702382 ~ 4702508 (+) True G405864

Expression Profile