RNA id: TU465819


Basic Information

Item Value
RNA id TU465819
length 264
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G405347
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 2627572 ~ 2627835 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCTACGGGTGTTCTGAATCTGAAAGCACTAGCGATCCCTTTTGCATGCAAGCACACTTCCTCGCTATCTACCCCTCTCCCTCCCCCATTTCAGGCCATGTGAAGTAAGCAAATGGGACGGTCAGCAGTGGTTTAGCATGATGGTGTTTGAACCCAGGAGCTGATTGCTGTTGACTCACGCCTCACTGGAGTGTGTGCACGTCTCGGCACTGATTAGCACAGTCTCCATCTGTTTCTAAGCAGCAGCGACAGTTTTTTGATCCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU465817 lncRNA upstream 1332 2626028 ~ 2626240 (+) True G405345
TU465815 lncRNA upstream 5307 2621952 ~ 2622265 (+) True G405343
TU465804 lncRNA upstream 35918 2591427 ~ 2591654 (+) True G405332
TU465785 lncRNA upstream 49197 2578088 ~ 2578375 (+) True G405314
TU465768 lncRNA upstream 95975 2531333 ~ 2531597 (+) True G405297
TU465821 lncRNA downstream 1494 2629329 ~ 2629617 (+) True G405349
TU465822 lncRNA downstream 2030 2629865 ~ 2630083 (+) True G405350
TU465823 lncRNA downstream 3625 2631460 ~ 2631662 (+) True G405351
TU465826 lncRNA downstream 5554 2633389 ~ 2633629 (+) False G405352
TU465839 lncRNA downstream 5554 2633389 ~ 2633733 (+) True G405352
CI01000299_02612562_02613926.mRNA mRNA upstream 12780 2612499 ~ 2614792 (+) True CI01000299_02612562_02613926
CI01000299_02195854_02198465.mRNA mRNA upstream 428647 2195798 ~ 2198925 (+) True CI01000299_02195854_02198465
CI01000299_02118245_02120332.mRNA mRNA upstream 505714 2116861 ~ 2121858 (+) True CI01000299_02118245_02120332
CI01000299_01855614_01858092.mRNA mRNA upstream 768869 1855614 ~ 1858703 (+) True CI01000299_01855614_01858092
CI01000299_01197545_01215711.mRNA mRNA upstream 1411583 1197422 ~ 1215989 (+) False CI01000299_01197545_01215711
CI01000299_02696797_02704180.mRNA mRNA downstream 68797 2696632 ~ 2704220 (+) True CI01000299_02696797_02704180
CI01000299_02706136_02711943.mRNA mRNA downstream 78038 2705873 ~ 2713740 (+) True CI01000299_02706136_02711943
CI01000299_02753238_02760499.mRNA mRNA downstream 125403 2753238 ~ 2760953 (+) True CI01000299_02753238_02760499
CI01000299_02813216_02818668.mRNA mRNA downstream 185306 2813141 ~ 2819096 (+) True CI01000299_02813216_02818668
CI01000299_03144958_03149338.mRNA mRNA downstream 516555 3144390 ~ 3149340 (+) True CI01000299_03144958_03149338
TU464370 other upstream 2021222 604870 ~ 606350 (+) True G403972
TU463930 other upstream 2216784 364139 ~ 410788 (+) True G403609
TU463894 other upstream 2555301 35462 ~ 72271 (+) True G403578
TU466101 other downstream 526762 3154597 ~ 3155174 (+) True G405609
TU466041 other downstream 1503423 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466350 other downstream 1667698 4295533 ~ 4320141 (+) True G405842
TU466383 other downstream 1861983 4505404 ~ 4505917 (+) True G405866
TU466374 other downstream 2074547 4702382 ~ 4702508 (+) True G405864

Expression Profile