RNA id: TU466246


Basic Information

Item Value
RNA id TU466246
length 226
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G405742
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 3778033 ~ 3783926 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGAAGAGTTGTTGTAGTAGAGTGTTGTTGACATGCCATCATTTTACACCAGACTGCTTCACAAACGAGGGTCAATTCAACGCTGGATTTGCACAAAAGATTAACATGACGGCACATGCTAGTCGATGAGTTGAATCAACTTCACAGCAACTACATAAATTTATCCACTAACCATTCAGAAATGTCCTAAAAGTTGTAACTTCTTCCTGAGTCTCTCCATCAGTGTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466205 lncRNA upstream 52853 3698428 ~ 3725180 (+) True G405710
TU466071 lncRNA upstream 220930 3552314 ~ 3557103 (+) True G405579
TU466067 lncRNA upstream 242335 3505295 ~ 3535698 (+) True G405575
TU466194 lncRNA upstream 300217 3477589 ~ 3477816 (+) True CI01000299_03478949_03486009
TU466191 lncRNA upstream 305418 3472375 ~ 3472615 (+) True G405697
TU466070 lncRNA downstream 109094 3893020 ~ 3912958 (+) True G405578
TU466061 lncRNA downstream 281205 4065131 ~ 4065565 (+) True G405569
TU466301 lncRNA downstream 292879 4076805 ~ 4077037 (+) True G405797
TU466060 lncRNA downstream 295049 4078975 ~ 4116184 (+) True G405568
TU466065 lncRNA downstream 345068 4128994 ~ 4129600 (+) True G405573
CI01000299_03594891_03678552.mRNA mRNA upstream 98421 3594891 ~ 3679612 (+) True CI01000299_03594891_03678552
CI01000299_03495286_03498691.mRNA mRNA upstream 279304 3494539 ~ 3498729 (+) True CI01000299_03495286_03498691
CI01000299_03478949_03486009.mRNA mRNA upstream 292024 3476088 ~ 3486009 (+) False CI01000299_03478949_03486009
CI01000299_03453437_03453736.mRNA mRNA upstream 323824 3452300 ~ 3454209 (+) True CI01000299_03453437_03453736
CI01000299_03382616_03423028.mRNA mRNA upstream 354336 3382491 ~ 3423697 (+) True CI01000299_03382616_03423028
CI01000299_03981006_04059237.mRNA mRNA downstream 197080 3981006 ~ 4059237 (+) True CI01000299_03981006_04059237
CI01000299_04105476_04115171.mRNA mRNA downstream 321550 4105476 ~ 4115227 (+) True CI01000299_04105476_04115171
CI01000299_04122601_04126314.mRNA mRNA downstream 338675 4122601 ~ 4126381 (+) True CI01000299_04122601_04126314
CI01000299_04131136_04133439.mRNA mRNA downstream 347134 4131060 ~ 4133802 (+) False CI01000299_04131136_04133439
CI01000299_04259743_04263032.mRNA mRNA downstream 474995 4258921 ~ 4263493 (+) True CI01000299_04259743_04263032
TU466101 other upstream 622859 3154597 ~ 3155174 (+) True G405609
TU464370 other upstream 3171683 604870 ~ 606350 (+) True G403972
TU463930 other upstream 3367245 364139 ~ 410788 (+) True G403609
TU463894 other upstream 3705762 35462 ~ 72271 (+) True G403578
TU466041 other downstream 347332 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466350 other downstream 511607 4295533 ~ 4320141 (+) True G405842
TU466383 other downstream 705892 4505404 ~ 4505917 (+) True G405866
TU466374 other downstream 918456 4702382 ~ 4702508 (+) True G405864
TU466651 other downstream 1140536 4924462 ~ 4927844 (+) True G406096

Expression Profile