Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU466774 |
| length | 572 |
| lncRNA type | read_through |
| GC content | 0.50 |
| exon number | 2 |
| gene id | G406203 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000299 |
| NCBI id | null |
| chromosome length | 6567443 |
| location | 5312168 ~ 5745426 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU466701 | lncRNA | upstream | 54956 | 5256739 ~ 5257212 (+) | True | G406134 |
| TU466657 | lncRNA | upstream | 355812 | 4956150 ~ 4956356 (+) | True | G406101 |
| TU466528 | lncRNA | upstream | 375720 | 4934315 ~ 4936448 (+) | True | G405999 |
| TU466523 | lncRNA | upstream | 378233 | 4818488 ~ 4933935 (+) | True | G405994 |
| TU466536 | lncRNA | upstream | 399644 | 4910196 ~ 4912524 (+) | True | G406007 |
| TU466760 | lncRNA | downstream | 11351 | 5756777 ~ 5827969 (+) | True | G406189 |
| TU466735 | lncRNA | downstream | 13798 | 5759224 ~ 5762316 (+) | True | G406164 |
| TU466781 | lncRNA | downstream | 84658 | 5830084 ~ 5831741 (+) | True | G406210 |
| TU467011 | lncRNA | downstream | 154231 | 5899657 ~ 5899988 (+) | True | G406417 |
| TU466739 | lncRNA | downstream | 182756 | 5928182 ~ 5929929 (+) | True | G406168 |
| CI01000299_05128395_05192154.mRNA | mRNA | upstream | 119174 | 5128348 ~ 5192994 (+) | True | CI01000299_05128395_05192154 |
| CI01000299_04906697_04907091.mRNA | mRNA | upstream | 402095 | 4906697 ~ 4910073 (+) | False | CI01000299_04906697_04907091 |
| CI01000299_04892566_04900169.mRNA | mRNA | upstream | 411632 | 4890391 ~ 4900536 (+) | True | CI01000299_04892566_04900169 |
| CI01000299_04864582_04885052.mRNA | mRNA | upstream | 426783 | 4864192 ~ 4885385 (+) | True | CI01000299_04864582_04885052 |
| CI01000299_04819297_04829755.mRNA | mRNA | upstream | 482181 | 4818685 ~ 4829987 (+) | True | CI01000299_04819297_04829755 |
| CI01000299_05778912_05790662.mRNA | mRNA | downstream | 33137 | 5778563 ~ 5790755 (+) | True | CI01000299_05778912_05790662 |
| CI01000299_05799020_05801977.mRNA | mRNA | downstream | 53516 | 5798942 ~ 5802114 (+) | True | CI01000299_05799020_05801977 |
| CI01000299_05816534_05817445.mRNA | mRNA | downstream | 71108 | 5816534 ~ 5817456 (+) | True | CI01000299_05816534_05817445 |
| CI01000299_05836707_05843149.mRNA | mRNA | downstream | 90875 | 5836301 ~ 5843594 (+) | True | CI01000299_05836707_05843149 |
| CI01000299_05844429_05845510.mRNA | mRNA | downstream | 98735 | 5844161 ~ 5845665 (+) | True | CI01000299_05844429_05845510 |
| TU466651 | other | upstream | 384324 | 4924462 ~ 4927844 (+) | True | G406096 |
| TU466374 | other | upstream | 607543 | 4702382 ~ 4702508 (+) | True | G405864 |
| TU466383 | other | upstream | 806251 | 4505404 ~ 4505917 (+) | True | G405866 |
| TU466350 | other | upstream | 992027 | 4295533 ~ 4320141 (+) | True | G405842 |
| TU466041 | other | upstream | 1178227 | 4131258 ~ 4133941 (+) | True | CI01000299_04131136_04133439 |
| TU466732 | other | downstream | 492412 | 6237838 ~ 6300508 (+) | True | G406161 |
