RNA id: CI01000300_02340225_02344792.mRNA


Basic Information

Item Value
RNA id CI01000300_02340225_02344792.mRNA
length 2677
RNA type mRNA
GC content 0.36
exon number 4
gene id CI01000300_02340225_02344792
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 2338788 ~ 2344976 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTATAAAAAGCATTTTATACGGGGCCCAAGGCGGTCACCTGCCTTTGGTAAGGAAAGGTAAAGTCATCATCTTCCTAATTTTTCCTAAGAAAGAAAAAGTCTAGCTAAATTATTTAGATTATTTATTATTAATATTATTTTAAATGATTTAAAATTTAACTTTGGTCTTATTTTTTTTTCTAAAAAAATTTGTTCAAATTCGTAGGATAACTGAATGTGACAAGACAAGAAACATTAACAGCCATTTTCAACATACTGTATAAGACATGCAACTGATTAAGAGTGATTGTGTGCATAATTTAAAATTAAAAATATTATTTGTTAATAGTTTAAATGCATTAGGCTACTTTACAATAAATTCAAGTTCTTTTACATTATTCCCTTAAATCCTTTTAATTATTTAATTCCTTTTCCTTTTATCAAATAATGGATGAATGTTTCATTGTTTTTAGTTTAGCCCAATTTTAGCATCACTTCACTGGTTGCTGGTTCATTTTAGAGTTGATTTTAAACTCCCCCACTATATGTTGCAGCATTTTATGTATGGCCTTAATCTGTTTTTTTTTTTTTTTGTTGTTGTTGTTGTTGTTGTTTGTTTTTTTTTTAAATTAAATATTATTTAATATTATTTGATCAATGATTTATGATGTAAAGCACATTGGTCAGCTGTTGCCATATAAATCGTGCTATATGAACTTTGACTTTTAGGTTTAATAAAAGGATATGTGCCCATTACCACAATGACACCGCACCTCCCTACTCCTTGAATAAGACGGATATATAGGCCTGCCCTACAGTATTTTTTCCACTATGTCATTGAATCATAGAATGACTTGAATGGGGAAAAACTCTGCAATTGGATACATCACTGTATCATGATACGGCTACAGAGATTACATTATGATAAACTGAACTTCCTGAGCAAGAGAGATGAATTTGTCATTTAAAGTGCCCATGCTCATTTAAGTTCATAATTTGACGAGACAACAGCCATTTTTCATCATATGATTAAGAGTAATTGTGTGCACATTTTAAAAGTAAAACTATTTGCAAATATTTCAAATGCGTTCTTTTACTAGTTTTTATTTTTATTAAATCCCTTTAATTTTTCCTTTTAGGCTTAATAAAAAGACATGTGTGCCCATTAGCCTACAAGATAGGCTGCGCATCTCCATCCCACTTGAACGCATACAAGCGGACCAAGCGCCACGCCTACCCTGCTCTCTGATAGGCCTATTCAATTACGCACATCCTATTCCCTCCTGAGTCCTGAGAGTCATCTGAAAGTGAAAGTGCACAACGCTTGCACTGTTATTTTTCGCTTGATAAATAGATATTGTAGGTAAGTGCCGATTTTTCTGTTTTGCGAGTCCGAAAAGGCAGTTTTTTGAGTGTTTCAAAACCTCTATTTTTTACACACACAGGATTTGCCGAAACATGTCCAGAGCTTTACGCAATCTGAGTGAGTGCTTTCTGCCGGACAAATCCGGTGCGCGGAAGAGGAGCCGCGAGATTGATGCCATGCTGAAACGAGACCGGCAAGTGGGGACTATGATCTTACTGTTCGGCTCGGAAAAGAGCGGAAAAGCAACTTTCCTTAAACAAATGCGTATTGTTAAGGGAGCCGAGTTCAACCATGAAGAGCTGCTTGAATTCAGAGAAGCAATTTACGACAACATTATACGGGGTATGAGAGTGTTGGTTCAAGAAAGAAAGAAACTGGGCATTCCTTGGCAAAACTCAGCCAATGAGATGCACGAGATGTTAATTGAATCTTTTGAGTGGAGAAAGAACTTTGAGCCCAGTGCATTTCAACCTTATGTTAGCGCTATTGATTCTCTCTGGAAGGATTCTGGGATTCAAGAAGCTCATCGCAGCAGGACCGACTTTGAGCTGTATGAATCAGTAAAGTACTACTTTGACAACATTCATCGTATTGGCCAACTGAACTACTTGCCACACAATCAGGACATTCTTTATACACACAAATATCGGAGCATAAAAAAGCATTATTTTGTTCTCCGTGATAGCCCTTTCCTTGTTGCAGAATGGGGTTTGAGAGAACCTTTGTCTCGGATATTTCGTATCAAGCATCCAATCCTCTATATTATTGGATCCAGTGATTATGACCGAATTTGTAACGAGTACAACTGCCTGGTTCAGTCATTGTATATATTTACGTCCCTCTACAATAAAAATATGTTCCTCAACGACATCATCATCCTCTTCTTTAACAAAATGGACCTGCTGGCAGAAAAAGTACAGACTGCAGATATCCGGAAGCATTTTCCTGAGTTCCAAGGTGATCCTCACAGGCTGGAGGATGTGCAGGAATTCTTGATTCAAAGTTTTAAAGAGAGGACAGGGAATTACAGCAGGCCGGTTTTCTATCACATGATCACTGCAGTGGACATAGACAATTTTCGTGATGTGTTCAAGACTGTTGAAGACACAATAATGCGCAGGAACCTCAACGGATTTCCTATCCTGTAAGACAGGGTTTCCCAAAAGGAGGTTTATGAGTTGCTGAAAAGCAAATGAATCACAATATATGACAAAAATAATTGCAATATAAACATTTGGCCAAGTTGTGCAGCCCTATTTTTTTTTTTTTTTTTTTTCAAATAAAATAAAATAAAATAAAATGTTATATAAACTCAAATACTTGTTGCAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU470085 lncRNA upstream 1001 2337563 ~ 2337787 (+) True G409141
TU470061 lncRNA upstream 31899 2305069 ~ 2306889 (+) True G409117
TU469964 lncRNA upstream 374691 1963272 ~ 1964097 (+) True G409028
TU469950 lncRNA upstream 379198 1930231 ~ 1959590 (+) True G409018
TU469935 lncRNA upstream 459915 1878286 ~ 1878873 (+) True G409006
TU470058 lncRNA downstream 25394 2370370 ~ 2370635 (+) True CI01000300_02356651_02369301
TU470099 lncRNA downstream 61535 2406511 ~ 2406856 (+) True G409155
TU470143 lncRNA downstream 116114 2461090 ~ 2461979 (+) True G409174
TU470174 lncRNA downstream 119503 2464479 ~ 2465111 (+) True G409205
TU470141 lncRNA downstream 148473 2493449 ~ 2505501 (+) True G409172
CI01000300_02313596_02320912.mRNA mRNA upstream 17700 2312515 ~ 2321088 (+) False CI01000300_02313596_02320912
CI01000300_01976057_01980856.mRNA mRNA upstream 357601 1976057 ~ 1981187 (+) True CI01000300_01976057_01980856
CI01000300_01801423_01807504.mRNA mRNA upstream 530663 1801423 ~ 1808125 (+) True CI01000300_01801423_01807504
CI01000300_01772239_01783579.mRNA mRNA upstream 554987 1771784 ~ 1783801 (+) True CI01000300_01772239_01783579
CI01000300_01753916_01754815.mRNA mRNA upstream 583808 1753916 ~ 1754980 (+) False CI01000300_01753916_01754815
CI01000300_02356651_02369301.mRNA mRNA downstream 11420 2356396 ~ 2370981 (+) False CI01000300_02356651_02369301
CI01000300_02372157_02389226.mRNA mRNA downstream 26791 2371767 ~ 2389411 (+) True CI01000300_02372157_02389226
CI01000300_02391089_02392297.mRNA mRNA downstream 45542 2390518 ~ 2392344 (+) True CI01000300_02391089_02392297
CI01000300_02477372_02477542.mRNA mRNA downstream 132335 2477311 ~ 2477549 (+) True CI01000300_02477372_02477542
CI01000300_02481007_02486342.mRNA mRNA downstream 133898 2478874 ~ 2487067 (+) True CI01000300_02481007_02486342
TU470056 other upstream 24894 2313409 ~ 2313894 (+) True CI01000300_02313596_02320912
TU469855 other upstream 579752 1749900 ~ 1759036 (+) False G408928
TU469856 other upstream 579752 1749900 ~ 1759036 (+) True G408928
TU469837 other upstream 703819 1633030 ~ 1634969 (+) True G408910
TU469410 other upstream 1318054 1017067 ~ 1020734 (+) True G408498
TU471035 other downstream 926709 3271685 ~ 3272398 (+) True G409984
TU471334 other downstream 1556212 3901950 ~ 3902151 (+) True G410258
TU471472 other downstream 1778722 4123698 ~ 4124416 (+) True G410382
TU471478 other downstream 1850670 4195646 ~ 4196555 (+) True G410388
TU472695 other downstream 3546091 5891067 ~ 5892425 (+) True CI01000300_05891147_05892754

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000260 True 1246 mRNA 0.41 4 NC_007112.7 11659861 ~ 11668782 (+)